Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e08r
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.0  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   2.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   4.5  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    26   7.9  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 11  FSDFQSSKYLPVRFPFYNLESAPLWIATIMSYSLLRWMI 127
           F D  +S+  PV +P  +++  P++    + YS+  W++
Sbjct: 788 FYDLTNSRLFPVNWPSMDIKGKPIFKPEELLYSMSFWIV 826


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 456 ITSPTINADNSCGNGWICE 400
           +  P I   N C NGW+CE
Sbjct: 60  VNDPQIGEINCCLNGWLCE 78


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 154 NRFSSAAVTRPGAGNNIAVCSGGETS-LKSLVHVP 255
           NRFS A+V   G+G+N +  +   +S  +S+V+ P
Sbjct: 258 NRFSFASVAETGSGSNFSRATSSRSSKTRSVVYEP 292


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 AWLPRQKAIWLLPLSHQLVRAPLPAVFLKTT 373
           AWL    A  L  LSH++   P+P+ F+ +T
Sbjct: 9   AWLHNNSAEHLRFLSHRIFIGPIPSNFIHST 39


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 628 QPERSWRWWKHLDIQAIP 575
           QP  SW +W+ +D++  P
Sbjct: 211 QPYHSWVYWRDVDVETAP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,787,149
Number of Sequences: 5004
Number of extensions: 82188
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)