Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e08r
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    33   0.22 
02_04_0288 + 21607289-21608251                                         31   0.90 
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    30   2.7  
09_02_0611 + 11235977-11236180,11236453-11236495,11237171-112372...    29   4.8  
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459...    29   4.8  
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797...    29   4.8  
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279           28   8.4  

>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 106 LVAAVDDTSATIAAYYNRFSSAAVTRPGAGNNIAVCSGG 222
           L+A ++DT A +   Y R S+AA   P  G  + V  GG
Sbjct: 50  LLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGG 88


>02_04_0288 + 21607289-21608251
          Length = 320

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 537 PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPTINADNSCGNGWICEHRWRQIHNMVVFRN 358
           P GY   +++  +  + A P + +RGD+    +  D++ GN  IC H     H+    R 
Sbjct: 124 PAGYDDCLAALRWVLSAADPWVAARGDLDRVFLAGDSAGGN--ICHHLAMHHHHDAPPRR 181

Query: 357 TAGNGALTNWWDNGSNQI 304
                 L + W  GS  +
Sbjct: 182 RLRGAVLIHPWFWGSEAV 199


>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 116  RWMIRARPSLPTTIDFPVQRLPDLAPEIISQ 208
            RW+ R  P LP+  DF +++ P +   +ISQ
Sbjct: 1280 RWLTRTLPHLPSLEDFELRKCPQIKFLLISQ 1310


>09_02_0611 +
           11235977-11236180,11236453-11236495,11237171-11237241,
           11237637-11237865,11238277-11238611
          Length = 293

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 720 RRNQLRWLVNWGPQWGLLASGDALTFIDNHDNQRGHGAGGNILTY 586
           R  ++ WL +    WG         F++NH+ Q G   GG +  Y
Sbjct: 50  REAEVAWLCSACRSWGFF---QIYNFLENHEQQLGAFRGGEVFLY 91


>06_03_1034 -
           27044892-27044983,27045189-27045216,27045514-27045908,
           27046224-27046312,27046352-27046620,27047037-27047270
          Length = 368

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 40  ASTVPVLQSRVSTPMDSNHHVILVAAVDDTSATIAAYYNRFSSAAVTRPGAGNNIAVCSG 219
           A T P L   +     ++  V+LVA V      IAA      +A ++R  AG  +AV +G
Sbjct: 8   AETPPTLLEYMGQAGAADDLVVLVAHVQSACKRIAALVASPGNAELSRGKAGGGVAVAAG 67


>05_06_0020 + 24976990-24977167,24978763-24978874,24979634-24979722,
            24979801-24979869,24979953-24980082,24980506-24980664,
            24980767-24981127,24981343-24981452,24981753-24981909,
            24983336-24983748,24983828-24984020,24984384-24986198
          Length = 1261

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 22   PVFKIFASTVPVLQSRVSTPMDSNHHVILVAAVDDTSATIAAYY-NRFSSAAVTRPGAGN 198
            PVF    STVP  Q +VST +  +       + +D S +  AY    + +A + + G G 
Sbjct: 909  PVFPAPRSTVPATQVQVSTLLSRSMSEATRRSGNDPSPSAPAYIPQTYRNAIIGKHGRGT 968

Query: 199  NIAVCSGGETSL 234
                 +   TSL
Sbjct: 969  TSGTTAYQSTSL 980


>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
          Length = 1066

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +2

Query: 155 IDFPVQRLPDLAPEIISQYVPAGRQV*RVWSMSHASLLKAMKAWLPRQKAIWLLPLSHQL 334
           +D     L    P++ SQ++          ++SH SL   +   + +   + +L LS   
Sbjct: 414 VDLSQNNLTGTIPDVSSQFLRLN-----YLNLSHNSLADTIPEAVVQYPKLTVLDLSSNQ 468

Query: 335 VRAPLPAVFLKTTML 379
            R P+PA  L ++ML
Sbjct: 469 FRGPIPANLLTSSML 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,833,990
Number of Sequences: 37544
Number of extensions: 641559
Number of successful extensions: 1849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)