Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e08r
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical pr... 183 1e-46
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 29 4.3
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 28 7.5
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 28 9.9
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 28 9.9
L23651-1|AAA27964.3| 610|Caenorhabditis elegans Temporarily ass... 28 9.9
>Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical protein
C50B6.7 protein.
Length = 713
Score = 183 bits (446), Expect = 1e-46
Identities = 99/257 (38%), Positives = 137/257 (53%), Gaps = 7/257 (2%)
Frame = -2
Query: 858 FPSGARPYIYQEVIDLGGEAISRNEYTPLAAVTEFRFGLELSQAFQRRNQLRWLVNWGPQ 679
+ S RP+ EVID GGEA+ +Y T F FG +S A ++++ ++L N GP
Sbjct: 248 YGSNQRPFAVHEVIDRGGEAVKCGDYFGNGRYTNFNFGAAVSAAAKQQSDWKYLANLGPG 307
Query: 678 WGL--LASGDALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSF 505
+G D L FIDNHDNQR + ++TYK ++Y A+ FMLA PYGYP++MSSF
Sbjct: 308 YGYGNNEDHDVLNFIDNHDNQRD--SSPYVVTYKDGQKYNLAVGFMLAWPYGYPRVMSSF 365
Query: 504 AFTDTEAGPPMNSRGD---ITSPTINADNSC--GNGWICEHRWRQIHNMVVFRNTAGNGA 340
AF+ ++ PP + + TSPT N D +C +GW+CEHRW I M FR+ A
Sbjct: 366 AFSYSDQSPPNSGASNDYATTSPTFNGDQTCNSNSGWVCEHRWPAIRQMAKFRSAVQGTA 425
Query: 339 LTNWWDNGSNQIAFCRGNQAFIAFNNDAWDMDQTLQTCLPAGTYCDIISGARSGNRCTGK 160
+ + + +IAF R + F A N + T LPAG YCD SG +C G
Sbjct: 426 AADIVTD-TRRIAFARDGKGFFALNQQDGAWTKIFATNLPAGDYCDHFSGGLDNGKCVGT 484
Query: 159 SIVVGSDGRARIIHRSN 109
I V D + + SN
Sbjct: 485 KITVRDDHTSYLSVPSN 501
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 477 PMNSRGDITSPTINADNSCGNGWICEHR 394
PM S G I S NSC G+ICE R
Sbjct: 641 PMCSSGSIASSVCGMANSCPIGYICEGR 668
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical protein
C54E10.1 protein.
Length = 872
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Frame = -2
Query: 783 YTPLAAVTEFRFGLELSQAFQRRNQLRWLVNWGPQWGLLASG-DALTFIDNHDNQRGHGA 607
+T AV++ R L +R++ L VN P+ L S +LT ++ D Q+
Sbjct: 697 FTGENAVSQCRRSSRLRNKQERQSLLESTVNIIPEPVFLRSNVTSLTTSESDDIQQFFLE 756
Query: 606 GGNILTYKQSRQYKGAIAFMLAHPYG--YPQLMSSFAFTDTEAGPPMNSRGDITSPTINA 433
++ + YK + + +G P+ A G + R I T+++
Sbjct: 757 NESLFQIEYKIDYKNYRDYTIVPSFGTVLPKSKCEIALICRPTGKSESDRMTICYKTVDS 816
Query: 432 DNSCGNGWICE 400
DN NG E
Sbjct: 817 DNDLANGCFSE 827
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
ZK688.5b protein.
Length = 1595
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 537 PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPT 442
P G+P +M+S T AGPP + SPT
Sbjct: 924 PAGFPLMMASSNVPSTSAGPPGWPIRQVVSPT 955
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
ZK688.5a protein.
Length = 1620
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 537 PYGYPQLMSSFAFTDTEAGPPMNSRGDITSPT 442
P G+P +M+S T AGPP + SPT
Sbjct: 924 PAGFPLMMASSNVPSTSAGPPGWPIRQVVSPT 955
>Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical
protein Y53C12A.3 protein.
Length = 557
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 252 PMHRC*KQ*RPGCRGRKQSGCYRCPT 329
P+ C K PGC+ ++ CY C T
Sbjct: 338 PIENCVKSTCPGCKSNRKYFCYDCRT 363
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 570 YKGAIAFMLAH-PYGYPQLMSSFAFTDTEAGPPMNSRGDI 454
Y+G + F+ H P YP AFT P +NS G I
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 570 YKGAIAFMLAH-PYGYPQLMSSFAFTDTEAGPPMNSRGDI 454
Y+G + F+ H P YP AFT P +NS G I
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>L23651-1|AAA27964.3| 610|Caenorhabditis elegans Temporarily
assigned gene nameprotein 250, isoform a protein.
Length = 610
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 637 QPRQPERSWRWWKHLDIQAIPTIQGR 560
+P QP W WK L+ A+PT + R
Sbjct: 539 EPTQP--GWSQWKQLNAPAVPTCEAR 562
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.128 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,354,125
Number of Sequences: 27780
Number of extensions: 490313
Number of successful extensions: 1285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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