Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e08r
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.           334   8e-94
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.22 

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score =  334 bits (820), Expect = 8e-94
 Identities = 149/261 (57%), Positives = 186/261 (71%)
 Frame = -2

Query: 864  HGFPSGARPYIYQEVIDLGGEAISRNEYTPLAAVTEFRFGLELSQAFQRRNQLRWLVNWG 685
            HGFP+ A+PYI+QEVID G EAIS+ EY  + AV EF++  E+S AF+  N L+WLVNWG
Sbjct: 231  HGFPNDAQPYIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLKWLVNWG 290

Query: 684  PQWGLLASGDALTFIDNHDNQRGHGAGGNILTYKQSRQYKGAIAFMLAHPYGYPQLMSSF 505
             QWG L S D+L F+DNHD QR +     ILTYK S++YK A+AFML+HP+G P++MSSF
Sbjct: 291  EQWGFLPSKDSLVFVDNHDTQRDNP---QILTYKYSKRYKMAVAFMLSHPFGTPRIMSSF 347

Query: 504  AFTDTEAGPPMNSRGDITSPTINADNSCGNGWICEHRWRQIHNMVVFRNTAGNGALTNWW 325
             F   + GPP +  G+I SP+I+ DN C NGWICEHRWRQI+NMV FRN      + NWW
Sbjct: 348  DFQSKDQGPPNDGNGNILSPSIH-DNICSNGWICEHRWRQIYNMVRFRNLVKGTKIDNWW 406

Query: 324  DNGSNQIAFCRGNQAFIAFNNDAWDMDQTLQTCLPAGTYCDIISGARSGNRCTGKSIVVG 145
            DNGSNQIAF RG   F+AFN D +D+ + L+ CLP G YCD+ISG     RCTGK + VG
Sbjct: 407  DNGSNQIAFSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVG 466

Query: 144  SDGRARIIHRSNEYDMMVAIH 82
            SDG A I   + E D ++AIH
Sbjct: 467  SDGNANIEIGAGEEDGVLAIH 487


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 637 QPRQPERSWRWWKHLDIQAIPTIQGRYRF---HVGTSLWLPSI 518
           QP+QP + +  WK +      T+Q R      H+  + W+PSI
Sbjct: 438 QPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSI 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.128    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,200
Number of Sequences: 438
Number of extensions: 6187
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)