Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e08f
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.062
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    30   0.44 
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   3.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.5  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   9.5  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 164 WDDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISY-RLVTRSGNENQF 340
           W  I    + ++   GF  I +SP  E L     +   +  ++P +Y RL    GNE   
Sbjct: 64  WQGIVDHLD-YIRDLGFTAISISPVVEQLEGPEYHGEAYHGHRPKNYYRLNPHFGNEEDL 122

Query: 341 SNMVRRCNNVGVRIYVDAIINHMTGTWNEN 430
             +    +  G+ + VD  INH    + E+
Sbjct: 123 KELSDALHGKGMYLMVDVAINHTISEYFED 152


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 581 GLKDLNQGSDYVRQQILNYMNRLIDMGVAGFRIDA 685
           G  DLN  +  VR+ + + +   +D GV GFR+DA
Sbjct: 179 GQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDA 213


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 233 PPNENLVIWSRNRPWWERYQPISYRL 310
           PP   L IWS+   W +   P  YRL
Sbjct: 170 PPKHPLSIWSQLYDWIDSQNPSQYRL 195


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 296 ISYRLVTRSGNENQFSNMVRRCNNVGVRIYVDAIINH 406
           +S+ + T+   +  F+N+ R C+N+ V + V    N+
Sbjct: 177 LSFSIYTKENEDALFNNVFRPCSNIIVSVLVFIFTNY 213


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 143 PWWCDPMHSEGFYRPTPESRPKVEGCTETSLS 48
           P + DP+H  GF+R  P S  +    TE SLS
Sbjct: 139 PIYRDPVHDFGFFRYDPSS-IRFHDVTEISLS 169


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 760 ETVGGI*IAETIVDHSQIVRPHVLCSINSETSNTHVNKT 644
           ETVG + + ET+  H      + L  + +ET +  V  T
Sbjct: 177 ETVGEVLVPETVAQHRTKFYDYTLDEMENETESGQVETT 215


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 625 DSKLYEPSY*HGCCW 669
           +++LYE    HGCCW
Sbjct: 566 ENELYEMISQHGCCW 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,658,600
Number of Sequences: 5004
Number of extensions: 83715
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)