Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e08f
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 40 0.003
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 38 0.012
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 33 0.26
01_06_0727 - 31517592-31518600,31519999-31520225 31 1.4
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 31 1.4
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 30 1.9
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 29 3.3
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 29 3.3
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 29 4.3
07_03_0098 - 13383385-13384392 29 5.7
03_02_0383 + 7966929-7968951,7969085-7969104 29 5.7
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 5.7
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 5.7
10_08_0468 - 18146369-18146701,18147267-18147467,18147525-181477... 28 7.5
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 7.5
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745... 28 7.5
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 28 9.9
06_01_0610 - 4415080-4415461,4415872-4416851 28 9.9
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Frame = +2
Query: 314 TRSGNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYG 493
++ GNE Q +++ + GV++ D +INH T + G G G P
Sbjct: 87 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKD--GRGIYCLFEG-----GTPDS 139
Query: 494 RNDFNWPHCVITGNDY-NCCPDRVRNCELSGLKDLNQGSDYVRQQILNYMNRL-IDMGVA 667
R D+ PH + G+ Y + + + D++ + V+++++ +++ L +D+G
Sbjct: 140 RLDWG-PHMICRGDPYGDGTGNPDTGADFGAAPDIDHLNKRVQRELIGWLDWLKMDIGFD 198
Query: 668 GFRIDAAKHMWPHDLRVIY 724
+R+D AK + D+ IY
Sbjct: 199 AWRLDFAKG-YSADVAKIY 216
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 37.5 bits (83), Expect = 0.012
Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Frame = +2
Query: 314 TRSGNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYG 493
++ GNE Q +++ + GV++ D +INH T + G G G P
Sbjct: 87 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKD--GRGIYCLFEG-----GTPDS 139
Query: 494 RNDFNWPHCVITGNDY-NCCPDRVRNCELSGLKDLNQGSDYVRQQILNYMNRL-IDMGVA 667
R D+ PH + + Y + + + + D++ + V+++++ +++ L +D+G
Sbjct: 140 RLDWG-PHMICRDDPYGDGTGNPDTGADFAAAPDIDHLNKRVQRELIGWLDWLKMDIGFD 198
Query: 668 GFRIDAAKHMWPHDLRVIY 724
+R+D AK + D+ IY
Sbjct: 199 AWRLDFAKG-YSADMAKIY 216
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +2
Query: 332 NQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYGRNDFNW 511
N+F VR + G+ + +D + NH T NE + +Y P G +N+
Sbjct: 338 NEFKTFVREAHKRGIEVIMDVVFNH-TAEGNEKGPILSFRGIDNSTYYMLAPKG-EFYNY 395
Query: 512 PHCVITGNDYNC 547
C GN +NC
Sbjct: 396 SGC---GNTFNC 404
>01_06_0727 - 31517592-31518600,31519999-31520225
Length = 411
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 494 RNDFNW-PHCVITGNDYNCCPDRVRNCELSGLKDLNQGSDYVRQQ 625
R D W PH + +DY CC NC + G+ +QQ
Sbjct: 298 RADKKWVPHLYVNNSDYICCHYNAPNCSTTTTTTTTDGASDEQQQ 342
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 320 SGNENQFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGG 445
SGN M+++C ++ ++ Y + + +T ++ +N+G GG
Sbjct: 292 SGNTKNEEEMLKKCESLALKRYKYSELKKITKSFEDNLGEGG 333
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = -1
Query: 490 VRNSRIVPVSEIGCASTCTNILIPSSSHVVDDGVHINPDANIVAATHHIRKLIF 329
VR+ I+PV I C +L P S + +++ +H +P+A + + HIR LI+
Sbjct: 540 VRHPNILPVLGIVETYDCCYMLHPKSPYTLENIMHYSPEA--LWSDWHIRFLIY 591
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 29.5 bits (63), Expect = 3.3
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Frame = +2
Query: 356 RCNNVGVRIYVDAIINHMTGTWN----ENVGTGGSTADFGNWHYPAVPYGRNDFNWPHCV 523
R NVG + V AI N+ T W E G W V G + F C+
Sbjct: 609 RLPNVGPQGKVIAIENYATSIWRMIQVEWPSCAGMNRYVNFWQIREV-LGESSFEASTCI 667
Query: 524 ITGNDYNCCPDR--VRNCEL-SGLKDLNQGSDYV 616
+ DY+ P R V +L G K L Q V
Sbjct: 668 VRSQDYSPAPQRNLVNALQLPDGTKQLQQNKKSV 701
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = +2
Query: 335 QFSNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTADFGNWHYPAVPYGRNDFNWP 514
+ V+R + G+++ DA++NH + G NW AV F
Sbjct: 3 ELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR 62
Query: 515 HCVITGNDYNCCPDRVRNCELSGLKDLNQGSDYVRQQILNYMNRL-IDMGVAGFRIDAAK 691
+G++++ P +++ ++VR + ++ + ++G G+R+D +
Sbjct: 63 GNKSSGDNFHAAP------------NIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVR 110
Query: 692 HMW 700
W
Sbjct: 111 GFW 113
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 29.1 bits (62), Expect = 4.3
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Frame = +2
Query: 452 ADFGNWHYPAVPYGRNDFNWPHCVITGNDYNCCPDRVRNCELSGLKDLNQGSDYVRQQIL 631
AD P+ P + +W V G+ Y+ DR+ GL DY+R++I
Sbjct: 140 ADEARLRLPSQPPAQAS-SWRAPVDLGDGYDAVLDRLAGLRSQGLTGAMVYGDYLRRRIA 198
Query: 632 NYMNRLID-MGVAGFRIDAAKHM---W---PHDLRVIYDRLRNLNTAHG--FPSGARP 778
R GF H W P D +++ R+ NL++ P G P
Sbjct: 199 PLQRRARGAWEYTGFEDYMRTHQGVKWDWVPEDFKMVIQRVLNLSSVEASLIPQGVLP 256
>07_03_0098 - 13383385-13384392
Length = 335
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 155 EWKWDDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISYRLVTRSGNEN 334
EW D I + R+ PR + + E+ +IW+ R R+QP + R++ R N
Sbjct: 198 EWWRDSIESPDNRYNSPR----LLPNEAPESSIIWADERHGLPRFQPQNNRVLPRFSFTN 253
Query: 335 QFSN 346
+ S+
Sbjct: 254 RSSS 257
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 128 PMHSEGFYRPTPESRPKVEGCTETSLSNILDLLSCD 21
P EGF +P GC +TS+S+ L+ SC+
Sbjct: 329 PEDDEGFTMASPAEAASTSGCDKTSVSSGLNGRSCN 364
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -1
Query: 529 SNDTMRPVEVIPAVRNSRIVPVSEIGCASTCTNILIPSSSHVVDDG-VHINPDANI-VAA 356
SND+ P+ S I+ E C + T LIPSS + +G + + V
Sbjct: 608 SNDSDAQTSGTPSRSTSHILKTPEKSCHNENTLPLIPSSEAIRSEGTTRYQSEMTVSVEM 667
Query: 355 THHIRKLI 332
T H+RK +
Sbjct: 668 TSHLRKTV 675
>01_06_1320 + 36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 341 SNMVRRCNNVGVRIYVDAIINHMTGTWNENVGTGGSTAD-FGNW 469
SN+V +C G + +IN M GT +EN D FGN+
Sbjct: 945 SNVVEKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNY 988
>10_08_0468 -
18146369-18146701,18147267-18147467,18147525-18147773,
18148058-18148090
Length = 271
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 260 TRLPNSRLVAKPEYHRILGVQGTFRIQQ-RCHPTSIRRD 147
T++PN+R P YHRI + QQ + H T RRD
Sbjct: 170 TKIPNNRQHQAPNYHRIDLKSEPHKSQQPQTHGTRRRRD 208
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.3 bits (60), Expect = 7.5
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +2
Query: 335 QFSNMVRRCNNVGVRIYVDAIINHM 409
++ MV+ N +G+R+ +D + NH+
Sbjct: 450 EYRQMVQALNRIGLRVVMDVVYNHL 474
>03_02_0323 -
7450996-7451229,7451320-7451469,7451571-7451718,
7451816-7451895,7451990-7452150,7452417-7452665,
7452747-7453211,7453306-7453421,7453529-7453647,
7453749-7453834,7453970-7454120
Length = 652
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 529 SNDTMRPVEVIPAVRNSRIVPVSEIGCASTCTNILIPSSSH--VVDDGVH 386
SND +R V++I +R+ RIVP+ + C I + S H ++D +H
Sbjct: 347 SNDFLREVDIITKLRHHRIVPLIGV-CVEGPNLISVYSYLHRGSLEDNLH 395
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 203 VQGTFRIQQRCHPT--SIRRDVPWWCDPMHSEGFYRPTPESRPKVEGCTETSLSNIL 39
++G R+Q T S+ +D+P S+ Y+P ES P +GC+ + I+
Sbjct: 376 IKGHLRLQYESSYTEASVLQDIPVSIRAKISQTLYKPYIESIPLFKGCSAEFIQQIV 432
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 135 PPWYISSNGSGMTSLLNAKGSLDPEDSVVF 224
P Y+ SN +G+ SLL + DP+ +VV+
Sbjct: 203 PSSYVRSNVAGLVSLLESCKDADPQPAVVW 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,954,254
Number of Sequences: 37544
Number of extensions: 594285
Number of successful extensions: 1600
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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