Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e04r
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.68 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   1.2  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     27   2.7  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   4.8  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   6.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   8.4  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 407 TDVNITIPLPSGNTSVVVHQWEGSYTQKGRNLIWSIPLVSKQQ--KTGSLEFTVTPSIPN 234
           TD N  + L +GN  V + +    YT K   LI     + + +  + GS+     P++PN
Sbjct: 752 TDANARVELHTGNKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPN 811


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 423  LLQLVFDIDVTSSVDAFGRPTVYGKRSQLVIVGSGQPPLEDSDVAVHREGALSLLQPNHA 602
            ++ L F +      DA G  T+Y K      VG     L+++   + R   L L  P H+
Sbjct: 883  IMNLWFSVLSEVEEDANGDATIYYKNDDYSAVGFY---LDETSEEMTRRKQLLLKDPVHS 939

Query: 603  GRAERFFVHVWM 638
              +  FF+ V+M
Sbjct: 940  VNSRSFFISVFM 951


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 32  IHIMFPTIRRKNKTTNNLFKQTRICLRGN 118
           IH++FPT+  ++     ++K+T I L  N
Sbjct: 131 IHVVFPTLLPRHDVLQKVYKETVILLANN 159


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 501 SQLVIVGSGQPPLEDSDVAVHREGALSLLQPNHAGRAER 617
           SQL  + +GQP    SD   ++  A  L QPNH+  +E+
Sbjct: 2   SQLYAL-NGQPLAGKSDDLANKLAAFGLSQPNHSSLSEQ 39


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 605 TGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDV-NIEYEL 429
           T  + +    +P  +H D+ +    LA  N  KL      C P  G     +   +EY++
Sbjct: 149 TEAVAVMHYLKPPLIHRDLKIENVLLAAPNSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208

Query: 428 EQ 423
           E+
Sbjct: 209 EK 210


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 673  TTKTRDRYSCRPIQTWTKKRSARPA*LG*SRLNAPSRCTATSESSS 536
            T K  DR+S + +++W    +  P       +N+ S CTA SES S
Sbjct: 1766 TDKDIDRFSLKMLESWGLFENKAPF------VNSTSICTAVSESRS 1805


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 419 HLVLTDVNITIPLPSGNTSVVVHQWEGSYTQK 324
           HL LTD N+TI   +  T  VV++ + S++ K
Sbjct: 325 HLRLTDDNLTIAYRNDKTGEVVYKDKFSFSNK 356


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 408 DRCQYHHTASFWQHFGGGAPVGG*LHAEGTQPHLEHSAREQTTE 277
           ++C ++   S  Q+   G PVGG +H+   Q   ++S   +  E
Sbjct: 41  EKCTFNKYYSSSQYQHTGRPVGGNIHSSSNQQRQKNSEAPRINE 84


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 29/120 (24%), Positives = 46/120 (38%)
 Frame = -1

Query: 895  TPQRGVTSXXXXXXXRNTTPASPCPPITRMFTCASRSV*T*SPAATVTYKLLNYQVC*RY 716
            TP    T         ++T  +   PIT      S +  T S A   +  + +  V    
Sbjct: 3286 TPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSS 3345

Query: 715  ALATSSSVAYTCTSTTKTRDRYSCRPIQTWTKKRSARPA*LG*SRLNAPSRCTATSESSS 536
               TSSS+  + T  T +    S  PI + T   S+ P     + LN  +  T++S  +S
Sbjct: 3346 TAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPI-TSSTALNTSTPITSSSVLNS 3404


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 9   VFLIIKNKFT*CFPLYE-EKIKQLII-----CLNKLVFVCVETDLLREVNGRPVFRLRHF 170
           V LI+ N     FPL E + +   +I     CL+ L+ V    DL+   + RP +R   +
Sbjct: 451 VLLILTNDQKWMFPLSECQDVVDALIDVATQCLDNLLSVLPNEDLMEIADKRPSYRQLLY 510

Query: 171 DSC 179
           + C
Sbjct: 511 NCC 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,746,936
Number of Sequences: 5004
Number of extensions: 81844
Number of successful extensions: 271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)