Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e04r
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 170 1e-42
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 170 1e-42
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 167 8e-42
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 160 1e-39
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 40 0.003
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 30 2.2
09_04_0383 + 17141534-17142046 30 2.2
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 30 2.2
07_01_1127 + 10456895-10457388,10457488-10458112 30 2.9
12_02_0960 - 24826918-24827373,24828357-24828471,24831110-248312... 29 3.8
07_01_0200 + 1433859-1434377 29 6.6
07_01_0196 + 1400708-1401226 29 6.6
07_01_0192 + 1367558-1368076 29 6.6
07_01_0188 + 1334405-1334923 29 6.6
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 29 6.6
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 28 8.8
>05_03_0442 + 14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 170 bits (414), Expect = 1e-42
Identities = 96/271 (35%), Positives = 152/271 (56%), Gaps = 5/271 (1%)
Frame = -3
Query: 887 ARGDVTAPVASPAQ-HDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRI 711
A G+V P+ P+P V + EE+LN+ RDG + F++ G L L++
Sbjct: 544 AEGEVILEDVQPSSVQSRASPLPPSDP-VTVTIEEKLNVTVKRDGGVNNFDVQGTLALQV 602
Query: 710 SNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKW 534
N+ G I + ++N+D L +THPN++K+ F S V+G K RPFP ++ ++KW
Sbjct: 603 LNDADGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKW 662
Query: 533 RLATTNDDKLAPLSVNCWPSEGVNGG-CDVNIEYELEQDHLVLTDVNITIPLPSGNTSVV 357
R+ ++ L PLSVNCWPS V+G VNIEYE + L +V I+IPLP+ +
Sbjct: 663 RIQGMDESSL-PLSVNCWPS--VSGSETYVNIEYE-AAEMFDLHNVVISIPLPALREAPS 718
Query: 356 VHQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLAL 183
V Q +G + RN L WSI L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ +
Sbjct: 719 VRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSD 778
Query: 182 LTAVKVTQAEDGSPVDFSQEISFHADKYEFV 90
L + +DG+P +SQ A Y+ V
Sbjct: 779 LKVTGIRPLKDGNPPKYSQRARLVAANYQVV 809
>01_06_1245 - 35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 170 bits (413), Expect = 1e-42
Identities = 96/269 (35%), Positives = 145/269 (53%), Gaps = 3/269 (1%)
Frame = -3
Query: 887 ARGDVTAPVASPAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRIS 708
A G+V P+ + + + EE+LN+ RDG + F++ G L L+I
Sbjct: 284 AEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLNVTVKRDGGVSNFDIQGTLALQIL 343
Query: 707 NEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWR 531
N+ G I + ++N+D L +THPN++KE F S ++G K RPFP ++ ++KWR
Sbjct: 344 NDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKDPNRPFPSGQNETPLVKWR 403
Query: 530 LATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVVH 351
+ N+ L PL+VNCWPS N VNIEYE + L +V I+IPLP+ + V
Sbjct: 404 IQELNESSL-PLAVNCWPSVSGN-ETYVNIEYE-ASEMFDLHNVVISIPLPALREAPGVR 460
Query: 350 QWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALLT 177
Q +G + RN L WSI LV + ++GSLEFTV + P+ FFP+SV +++ + + L
Sbjct: 461 QIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLK 520
Query: 176 AVKVTQAEDGSPVDFSQEISFHADKYEFV 90
+ +GSP FSQ Y+ V
Sbjct: 521 VTAIRPLREGSPPKFSQRNRLVTYNYQVV 549
>05_03_0443 + 14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 167 bits (407), Expect = 8e-42
Identities = 94/270 (34%), Positives = 150/270 (55%), Gaps = 4/270 (1%)
Frame = -3
Query: 887 ARGDVTAPVASPAQHDAG-KPVPADHKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRI 711
A G+V P+ + P+P V + EE+LN+ RDG + F++ G L L++
Sbjct: 370 AEGEVILEDVQPSSVQSRVSPLPPSDP-VTVTIEEKLNVTVKRDGGVNNFDVQGTLALQV 428
Query: 710 SNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKW 534
N+ G I + ++N+D L +THPN++K+ F S V+G K RPFP ++ ++KW
Sbjct: 429 LNDTDGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKW 488
Query: 533 RLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVV 354
R+ ++ L PLSVNCWPS N VNIEYE + L +V I+IPLP+ + V
Sbjct: 489 RIHGMDESSL-PLSVNCWPSVSGN-ETYVNIEYE-AAEMFDLHNVVISIPLPALREAPSV 545
Query: 353 HQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 180
Q +G + RN L WSI L+ + ++GS+EF V P+ P+ FFP+S+ +++ ++ + L
Sbjct: 546 RQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADPSTFFPISIGFSASSTFSDL 605
Query: 179 TAVKVTQAEDGSPVDFSQEISFHADKYEFV 90
+ +DG+P +SQ Y+ V
Sbjct: 606 KVTGIRPLKDGNPPKYSQRARLVTANYQVV 635
>08_02_0433 - 17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 160 bits (389), Expect = 1e-39
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 5/271 (1%)
Frame = -3
Query: 887 ARGDVTAPVASPAQ-HDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRI 711
A G+V P P+P V + EE+LN+ RDG + F++ G L L +
Sbjct: 410 AEGEVIMEDFQPCSLQSRSSPLPPSDP-VTVAVEEKLNVAVKRDGGVNNFDVQGTLALLV 468
Query: 710 SNEQFGRIHVHVDNKDSRPLQLQTHPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKW 534
N+ G I + ++++D L +THPN++K+ F S ++G K RPFP ++ ++KW
Sbjct: 469 LNDADGLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPIRPFPSGQNETPLVKW 528
Query: 533 RLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQDHLVLTDVNITIPLPSGNTSVVV 354
R+ N+ L PLSVNCWPS + VNIEYE + L V I+IPLP+ + V
Sbjct: 529 RIQGMNESSL-PLSVNCWPSI-LGNETYVNIEYE-ASEMFDLHSVIISIPLPALREAPRV 585
Query: 353 HQWEGSYTQKGRN--LIWSIPLVSKQQKTGSLEFTVTPSIPNDFFPLSVTWTSETSLALL 180
Q +G + RN L WSI L+ + ++GS+EF V P+ P+ F+P+SV +++ + + +
Sbjct: 586 RQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISVGFSASNTFSNV 645
Query: 179 TAVKVTQAEDGS-PVDFSQEISFHADKYEFV 90
+ +GS P +SQ + AD Y+ V
Sbjct: 646 KVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 676
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -3
Query: 275 TGSLEFTVTPSIPNDFFPLSVTWTSETSLALLTAVKVTQAEDGS-PVDFSQEISFHADKY 99
+GS+EF V P+ P+ FFP+SV +++ + + + + ++GS P +SQ + AD Y
Sbjct: 208 SGSMEF-VPPADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNY 266
Query: 98 EFV 90
+ V
Sbjct: 267 QVV 269
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 572 PFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEG-VNGGCDVNIEYELEQDHLVLTDVN 396
P P++ +L+ T DDKL + V S + G DVN+ E L V+
Sbjct: 136 PDPIYEATRLLQDSRTKTYDDKLYKIVVAMGTSRSSILGELDVNLAEFAE----ALKPVS 191
Query: 395 ITIPLPSGNTSVVVHQWE 342
I +PL ++H WE
Sbjct: 192 IALPLRGCEFGTILHVWE 209
>09_04_0383 + 17141534-17142046
Length = 170
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 345 PLVHHHRSVARRKRYGDIDICQH 413
PL HHHR + R+GD+ C +
Sbjct: 75 PLTHHHRGTSYSGRHGDVTRCNY 97
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 557 CASGRGVEPASAQSRRSSGTLLCPRLDGSATVTVSSLCC 673
CA+G V+P + SG L+C LDG V++L C
Sbjct: 81 CAAGLMVDPLFLYAVSLSGPLMCVFLDGWLAAAVTALRC 119
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 599 VIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPLSVNCWPSEGVNGGCDVNIEYELEQD 420
+ G A + FP D ++ TNDD +C S+ N C+VNI ++ D
Sbjct: 197 ITGSSVAHQEFPPQEDGHNADNNISNTNDDDTTNNHASCPISDHSNQACNVNIIHQGVDD 256
Query: 419 HL 414
+
Sbjct: 257 SI 258
>12_02_0960 -
24826918-24827373,24828357-24828471,24831110-24831236,
24831517-24831559,24831964-24832022,24832850-24833141
Length = 363
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 279 LLFAHERNAPDEVASLLRVATLPLVHHHRSV 371
LL HER P V L+ V L L H +R+V
Sbjct: 92 LLGGHERATPKSVLELMNVKDLTLAHMYRTV 122
>07_01_0200 + 1433859-1434377
Length = 172
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 269 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 361
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0196 + 1400708-1401226
Length = 172
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 269 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 361
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0192 + 1367558-1368076
Length = 172
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 269 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 361
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>07_01_0188 + 1334405-1334923
Length = 172
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 269 SRFSVVCSRAECSR*GCVPSACSYPPTGAPP 361
S S+ C+RA CS G V +C+Y P G P
Sbjct: 137 STTSIGCARAACSNGGGVIISCNYFPPGNFP 167
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 557 CASGRGVEPASAQSRRSSGTLLCPRLDGSATVTVSSLCC 673
CA+G V+P + SG L+C LDG V+ L C
Sbjct: 66 CAAGLMVDPLFLYAVSVSGPLMCVFLDGWFAAAVTVLRC 104
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 510 VIVGSGQPPLEDSDVAVHREGALSLLQPNHAGRAERFF 623
V+ GSG PPLE + A+ G+ SL P +G + RF+
Sbjct: 52 VLSGSGTPPLETTGFALSPGGSRSLYAP--SGWSGRFW 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,472,229
Number of Sequences: 37544
Number of extensions: 645377
Number of successful extensions: 2210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2192
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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