Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e03r
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   256   3e-69

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  256 bits (627), Expect = 3e-69
 Identities = 128/232 (55%), Positives = 158/232 (68%), Gaps = 1/232 (0%)
 Frame = -1

Query: 868 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXX 689
           LNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F      
Sbjct: 222 LNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGML 280

Query: 688 XXXXXXXXXGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINY 509
                    G +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I +
Sbjct: 281 WAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQW 340

Query: 508 N-PNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXX 332
           +   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS           
Sbjct: 341 SRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAY 400

Query: 331 IN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 176
               P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 401 Y-WSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,826
Number of Sequences: 5004
Number of extensions: 48947
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)