Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e01r
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    31   0.23 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    31   0.30 
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    28   2.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   2.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.7  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           27   4.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   6.4  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 170 SFVSCFKELRWCLKHTLYIKSIHIVTEINTYIVR 69
           SFV   K+L+WC K+ L  +++    +I T++VR
Sbjct: 515 SFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVR 548


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 720 TTSHQSLSQSKQI-MKKGTVIRNNPLGSFSHTVLLSF*TPNRILS 851
           T S  + +Q K+  +KKG V+++  LG   HTV+ +F + N  LS
Sbjct: 404 TMSTVNSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLS 448


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188 KKTYFIALRQSEIDTI-FTESSFYLLKVLGINVD 286
           KKT F ++  +E   + FT++SFYL ++LG+  D
Sbjct: 395 KKTMFESVNLAETKKVDFTKTSFYLAQLLGMADD 428


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 403 FSYFEYIKKHFEIWFLSYRDHTSKQTI*GGLRRKKCRFIFL*NYLTHFIIITIAN-*HVL 579
           FS  EY+   F + FL + DH     I G  + K    +FL N +   + ++ A+  H L
Sbjct: 121 FSIHEYVSDEFILSFLPFHDHPFFARILGCSKPKSRPLLFLENAIKMPVTLSRADIVHAL 180

Query: 580 KKMKK 594
            + K+
Sbjct: 181 SRDKE 185


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 663 LNQFEYSLWARRGRPL---SVLTTSHQSLSQSKQIMKKGTVIRNNPLG 797
           + ++  SL   +G  L   ++ T    S  +SKQ +K+ T ++N+P G
Sbjct: 478 IQKYASSLTGAKGGQLKRQTIFTQGPNSTKESKQAVKEETSVKNSPKG 525


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 170 SFVSCFKELRWCLKHTLY--IKSIHIVTEINTYIVR 69
           SF     E+R C++H LY  +    + TE N  +VR
Sbjct: 188 SFTGSIDEMRRCIEHGLYVGVNGCSLKTEENLEVVR 223


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 138 PSQLFETRYKTQKLNDLK 191
           P++LF TRY+ ++ ND++
Sbjct: 533 PTELFPTRYEVERSNDMR 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,273
Number of Sequences: 5004
Number of extensions: 77215
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)