Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d22f
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 55 5e-08
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 50 2e-06
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 43 2e-04
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.011
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 32 0.40
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 4.9
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 4.9
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 4.9
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 4.9
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 8.6
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.6
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.6
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 55.2 bits (127), Expect = 5e-08
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 11/204 (5%)
Frame = +2
Query: 188 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 367
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC + Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 368 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-- 541
N + + +H YN T ND+A++ + I+ + L +
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151
Query: 542 -----NXXXXXXXXXXXXRTSDAASGANNQQKRQVSLQVITNAVCARTFG----NNVIIA 694
N +S N+Q + S+ +I++ C +T+ +V I
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211
Query: 695 STLCVDGSNGRSTCSGDSGGPLTI 766
G+ T GDSGGPL I
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLI 235
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 49.6 bits (113), Expect = 2e-06
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Frame = +2
Query: 188 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 367
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ R + +++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112
Query: 368 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN-DVAIIN-HNHVGFTNNIQRINLASGSN 541
+G SG T+ V +H YN+ + D AI+ H V + + I L S
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP- 170
Query: 542 NXXXXXXXXXXXXRTSDAASGANNQQKRQVSLQVITNAVCAR--TFGNNVIIASTLCVDG 715
++ S + R++ + +++ C+ + + + S LC
Sbjct: 171 -AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY 229
Query: 716 SNGR-STCSGDSGGPLTIGSGG 778
S G+ +C GDSGGPL G
Sbjct: 230 SYGKIDSCQGDSGGPLMCARDG 251
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 43.2 bits (97), Expect = 2e-04
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 5/195 (2%)
Frame = +2
Query: 188 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 364
R+VGG GA P A L T CGAS+L T +TAAHC+ R + +
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 365 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 541
+ N G ++ + + Y D +D+AI+ + G N + S
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142
Query: 542 NXXXXXXXXXXXXRTSDAASGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG 715
+ + + G ++ Q +L I N C + + + S C
Sbjct: 143 DFVYTPGRQCVV--SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGY 200
Query: 716 -SNGRSTCSGDSGGP 757
G +C GDSGGP
Sbjct: 201 LEGGIDSCQGDSGGP 215
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 185 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 328
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 629 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT 763
++L T A C +G ++ S C ++ CSGDSGG LT
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLT 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 203 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 334
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 412 GDPGASGEDVSCAKSEGELTSLGSPGPP 329
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 260 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 129
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 260 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 129
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 458 HNDVAIINHNHVGFTNNIQRINLASGSNN 544
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 458 HNDVAIINHNHVGFTNNIQRINLASGSNN 544
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 458 HNDVAIINHNHVGFTNNIQRINLASGSNN 544
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +1
Query: 493 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 666
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 667 HVWKQCDHC--LHP 702
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 412 GDPGASGEDVSCAKSEGELTSLGSPGPP 329
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 412 GDPGASGEDVSCAKSEGELTSLGSPGPP 329
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 581 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 754
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 581 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 754
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,415
Number of Sequences: 27780
Number of extensions: 316637
Number of successful extensions: 1441
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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