Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d21f
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    78   3e-15
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    77   1e-14
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    75   3e-14
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    61   5e-10
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.003
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    28   4.7  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   4.7  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62

Query: 208 KG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEGGKGTKE 345
           K    E                IVGASL  I  KR  KPE     +E
Sbjct: 63  KDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEVRDAARE 109


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
 Frame = +1

Query: 40   LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 216
            LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076

Query: 217  EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEGGKGTKE 345
             E                IVGA+L  I  KR+ KPE     +E
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAARE 1119


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
 Frame = +1

Query: 22  VKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRK 201
           +K+   LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++
Sbjct: 27  LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQ 86

Query: 202 FKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEGGKGTKE 345
            KK    E                IVGA+L  I  KR  KPE     +E
Sbjct: 87  HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAARE 135


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 26/56 (46%), Positives = 32/56 (57%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 195
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 195
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 68  IQAMARPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLE 247
           +  M  PW  W +KPS   I ++ P    G  L++   +  T  S   A  ++    + E
Sbjct: 154 LSKMIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPE 209

Query: 248 GPKSS 262
           GP+S+
Sbjct: 210 GPESA 214


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 335  PLPPSGFILRLAIMSLSEAPTI 270
            PLPPS  +L L+I  +S  PT+
Sbjct: 1052 PLPPSTIVLELSIAKVSTLPTL 1073


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,484
Number of Sequences: 37544
Number of extensions: 201866
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)