Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d21f
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    91   3e-19
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    27   9.8  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 47/109 (43%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 208 K---GQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEGGKGTKE 345
           K   GQE+                + G SL  I+AKRN   +  +  +E
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQRE 109


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 198
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 272
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 272
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 272
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 323 SGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 207
           S FIL + I  +    + A W+ + L V FF   ++ PF
Sbjct: 408 SAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,324
Number of Sequences: 27780
Number of extensions: 170779
Number of successful extensions: 328
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)