Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d19r
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    28   7.4  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    28   7.4  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    28   7.4  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    28   7.4  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    28   7.4  

>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 65  RDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMS 184
           R+ N RK   +  ++KH+  S   S + S ERS +R K S
Sbjct: 21  RNENPRK---VIKIIKHVGSSSSYSSSSSEERSKRRHKNS 57


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 44  NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 169
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 44  NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 169
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 44  NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 169
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 41  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 82


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 44  NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 169
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 40  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 81


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 44  NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 169
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 36  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,067
Number of Sequences: 27780
Number of extensions: 350664
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)