Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d19r
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   8.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 47  KKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQN-ISRERSNKRSKMSLVLEK 199
           K+Y C R+  ++ Y    S  K+   SK  S++   RERS +   +S +  K
Sbjct: 270 KRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNK 321


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 228 FLNVIQSYLYFSKTSDIFDRLFDLSRLMFCELHLLKAMCLTN 103
           F N   SYL+   + + F RL+   R+++     +KA C  N
Sbjct: 92  FYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMN 133


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +1

Query: 433 LYSDRYRYDYIHDLCLTFRHNLDIKEHSVCINSEVSNNFGKYE*SMVIFFFVRTTL**QR 612
           + +D  + D + ++      ++D+K  S CIN+  S +  K E  +         L    
Sbjct: 89  IQNDEIQLDKLVEMANRKNISIDVKMLSECINANKSTD--KCENGLNFIICFSKLLSDMY 146

Query: 613 PSTFNETLLLMSFI 654
             TF +TL   S++
Sbjct: 147 EDTFEDTLKHKSYV 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,084
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)