Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d19f
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    74   2e-14
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    60   3e-10
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    27   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.9  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   6.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   6.9  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   9.2  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   9.2  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    25   9.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.2  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 40/106 (37%), Positives = 61/106 (57%)
 Frame = +3

Query: 414 LKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLV 593
           +K N      DIK+LLLGAG+SGK+TI+KQM++++  GF+    KQYR +++ N I SL 
Sbjct: 64  VKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLC 123

Query: 594 AILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEPFSEELLAAM 731
            +L AM N  +     + +   + V       +  EPFS E+  A+
Sbjct: 124 LLLEAMDNSNVSLLPENEKY--RAVILRKHTSQPNEPFSPEIYEAV 167


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 28/75 (37%), Positives = 49/75 (65%)
 Frame = +3

Query: 402 IDKNLKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTI 581
           I+K ++    +  K  K+LLLGA +SGKSTI KQ+KI++++GF+ E+   + PV+  N +
Sbjct: 20  IEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIRRNLL 79

Query: 582 QSLVAILRAMPNLGI 626
           +S   +++ +   GI
Sbjct: 80  ESAKTLVKIIVQKGI 94


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/26 (34%), Positives = 22/26 (84%)
 Frame = +3

Query: 435 ASKDIKLLLLGAGESGKSTIVKQMKI 512
           ++K++++L+LG   +GK+TI+ ++K+
Sbjct: 18  SNKEMRILMLGLDAAGKTTILYKLKL 43


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 352  PISAVLPMLWPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 224
            P S + P+  P A   P P P    P+ + ++   PV P    PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 399 LIDKNLKENGIQASKD-IKLLLL-GAGESGKSTIVKQMKI 512
           L DK+   N I  S D ++ LL+ G    GKS+ VKQ+ +
Sbjct: 746 LSDKSFVPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLAL 785


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 337 LPMLWPQAAPTPEPGALS-PISQHALYTRPVAPALPEPP 224
           LPM  P A P P    ++ P+        P+ PA P PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 441 KDIKLLLLGAGESGKSTIVK 500
           +++++LLLG   +GK+TI+K
Sbjct: 15  REVRVLLLGLDNAGKTTILK 34


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 310 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 203
           P P PG +      A  T P AP +P  P+  TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 765 HS*TPESAQSLSSRREAPH*TVPCPP 688
           H   P + +S S+  + PH T+P PP
Sbjct: 274 HPRRPSATKSCSAAVDCPHTTIPKPP 299


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 429 IQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 539
           I     I +  +G    GKST+VK +  +H   F NE
Sbjct: 18  ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 VLANRARVL*SNR*KLSMKVDSQMKTSNSTGPWS 567
           +LAN  R++ SN  K+    D Q + S   GPW+
Sbjct: 1   MLANALRLV-SNSKKIKYDYDIQKENSVQVGPWT 33


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 271 HALYTRPVAPALPEPP 224
           +A Y RPVAP +P+ P
Sbjct: 137 NAEYNRPVAPVIPDAP 152


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 346  SAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT--ILAPNTRT 194
            +A  P+  P A   P P A    +      RP APA+   P T    AP T T
Sbjct: 995  AATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,221
Number of Sequences: 5004
Number of extensions: 67783
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)