Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d18r
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0139 + 1263356-1264273                                           32   0.41 
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931...    30   2.2  
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     29   2.9  
04_01_0061 + 617966-618025,618619-618780                               29   3.8  
05_07_0179 + 28195929-28195954,28195966-28196286,28196397-281966...    28   6.6  
04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284...    28   6.6  
04_04_0157 + 23165638-23166633                                         28   8.7  

>01_01_0139 + 1263356-1264273
          Length = 305

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 390 SAGETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRS 247
           SA  +ST +LAPW   +   R + PTR+  +  + PT+  TT+    R+
Sbjct: 94  SASASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARART 142


>10_08_1025 -
           22391267-22391767,22392641-22392736,22392838-22393106,
           22393257-22393431,22393503-22393718,22393819-22393926,
           22394020-22394544,22394631-22394819,22394924-22395041,
           22395172-22395437,22395521-22395658
          Length = 866

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 336 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLS 187
           S    PT    ++ +       TS T PR+ SS+ N +    PP+  LL+
Sbjct: 764 SPAAAPTISSSTTTTTGNGNGETSSTPPRNSSSNNNNADELLPPNGCLLT 813


>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 230 FVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWREEATIHHGAREI-VEVSPADH 394
           F+     R  VPE V+     + ++ SFL  TVW+    +H   RE  V VS  ++
Sbjct: 694 FIQSSDRRDIVPENVAKNWFDELVDRSFLQPTVWQGRYVMHDLIREFSVAVSSNEY 749


>04_01_0061 + 617966-618025,618619-618780
          Length = 73

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 65  SKFALLLTXSIDRDGVLHPIDDFS*VH----HE-DII*VVNDIHESDKSAFDG 208
           S   L+L  ++D  GV+H   D   VH    HE +++  + D HE+D +A DG
Sbjct: 19  SMAGLVLAGAVDDAGVVHVDGDVEGVHRDVLHEAELLVEIVDPHEADLNASDG 71


>05_07_0179 +
           28195929-28195954,28195966-28196286,28196397-28196664,
           28203206-28203667
          Length = 358

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 145 VNSAEVIDW-VKNPVPIDRXRQQQCKFTXPSICRPSFCGPLTGTHNQLS 2
           ++  EV+ W  K P+P+       CK+   +  RP    PLT    Q++
Sbjct: 264 LSQTEVLSWDCKIPLPVTPQSLPSCKWDIYAGYRPGLLSPLTFASQQIN 312


>04_03_0465 -
           16227552-16227842,16227993-16228217,16228342-16228477,
           16229756-16229974,16230269-16230569,16231865-16232108
          Length = 471

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 361 CSMVDGCFFTPDRTDEEGWFKFILTNFERHYLGNRAPFGF-FVHEWFISSNPAIKRAFVR 185
           C  ++   F  +   EEGW++ + T    +Y  +RA  G+ +    F   + +  R FV 
Sbjct: 165 CKRLETSLFISEYEQEEGWWRDLYTYVGLNYARDRAVEGYLWSCLVFYEKDLSFTRTFVA 224

Query: 184 FMDIINNLND 155
            M ++  L D
Sbjct: 225 KMILLVTLMD 234


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 630 LLASPLVQLKVCVSPSXRCPVTQVSRLWQILTYCTTAPGPQLP*XXQVYGLTLFTTNLFR 451
           LL  P   L    +P+ R P T V+ LW +     + P   LP       L L  T+  R
Sbjct: 21  LLLRPSRSLSTSTTPATRAPATPVAVLWDL---AASRPPSTLPLYDAAVRLHLAATSFGR 77

Query: 450 ---TALFLH 433
              +A F+H
Sbjct: 78  VRLSAAFVH 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,092
Number of Sequences: 37544
Number of extensions: 491035
Number of successful extensions: 1372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)