Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d18f
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    31   0.22 
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   3.6  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.3  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 225  VINIETYREVLY-GRSNSNRCPAGATFYVSHEYTNYQLV--NELYNRGFEIALHSISHRT 395
            V N E Y    Y    N++    G  ++ +H++ N+ ++     +N G  IAL+ I H+T
Sbjct: 1325 VYNPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFCIMIGYTAFNLGAAIALYYIIHKT 1384

Query: 396  P 398
            P
Sbjct: 1385 P 1385


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 331 SWSTNSTIEASRLLYIRSVTEPPRRSGLMPRIKT----WSRKLEIRKDKWRIL 477
           SW+  S +E       RS+TE   + GL PR  T    W   + + + K ++L
Sbjct: 421 SWAMQSAVEGKWSNNGRSITESWLKEGLRPRCITRDLKWGTPVPLEEFKGKVL 473


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 253 TSRYVSMLMTLIPSSNVTVTNCGVSLARNPPGILVDE-HLQSGSLQASSSHGVANGSS 83
           T R  SML   I SSN   +N G S      G  ++E  +Q G LQ        +GS+
Sbjct: 111 TRRIQSMLQDFIKSSNGGFSNYGSSANGKSSGNALEEVEIQKGLLQIIDGLVFLHGSA 168


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 593 HNCLD*SRSMALHSSPRIYSGLHYSSMP--NCVNSWTVGAP 709
           +N  D SR+    SSP I S   Y SMP  N V+S  + AP
Sbjct: 370 NNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAP 410


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 58  SSWLRLLALSCHWLHHVTKRLVSSRTADARPLIFLEDY 171
           SS+ +LL    ++ HH+T   +SS    +  LIFL  Y
Sbjct: 96  SSYDQLLYFRQNYYHHITPSAISSGLLVSLVLIFLLAY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,301
Number of Sequences: 5004
Number of extensions: 67791
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)