Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d18f
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 31 0.93
01_07_0176 - 41733845-41734834,41736058-41736588 31 1.2
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 29 3.7
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 29 4.9
07_01_1196 - 11369673-11369693,11369737-11370270 28 6.5
08_02_1593 + 28105567-28105830,28106075-28106164,28106435-28106524 28 8.6
07_01_0962 - 8075975-8077282 28 8.6
06_01_0499 - 3581145-3582425 28 8.6
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 28 8.6
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 31.1 bits (67), Expect = 0.93
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = -2
Query: 533 GHLKEGDTHTFNCTSGDASKMRHLSFLISNFLDQVLIRGISPERLGGSVTDRM*SNLEAS 354
GH+ E H F T AS S ++NF D L I G S+ + +LE+
Sbjct: 913 GHMSESGIHNFELTGVIASDKSEYSEKVANFADTDLALVID----GSSLVYILEKDLESE 968
Query: 353 IVEFVD--QLIVCVLVADVEGSSGWAAVRVAAAVKDLTVCLNVNDIDTV 213
+ + ++++C VA ++ + ++ + L + ND+ +
Sbjct: 969 LFDLATSCKVVICCRVAPLQKAGIVDLIKSRTSDMTLAIGDGANDVSMI 1017
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -3
Query: 190 CGVSL--ARNPPGILVDEHLQ----SGSLQASSSHGVANGSSVPRAAATRSKEHKTDSLF 29
CG + A PPG L+ +HL SG ASS G A GS+ AAAT S+
Sbjct: 53 CGAAADQAAAPPGALLLDHLSPRSPSGGASASSPRG-AGGSAAAAAAATPGAVIPVSSVS 111
Query: 28 IAIF 17
+F
Sbjct: 112 YEVF 115
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 289 PELPSTSATSTQTISWSTNSTIEASRLLYIRSVTEPPRRSGLMPRIKTWSRKLEI 453
P+LPS TS TISW N I S T+ R G + S+K ++
Sbjct: 460 PQLPSKEQTSHLTISWRLNFVQSTMLKGMIESGTKQGLREGYAQFTEVLSQKTKV 514
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 CDEEACKLPDCRCSSTNIP-GGLRARDTPQFVTVTFDDGINVINIE 239
C + P S+ IP LRA TP+FVT D+ + ++E
Sbjct: 25 CAAARRRAPGASASAKGIPRSALRASVTPEFVTAAPDEAVEESSVE 70
>07_01_1196 - 11369673-11369693,11369737-11370270
Length = 184
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 491 SGDASKMRHLSFLISNFLDQVLIRGISPERLGGSVTDRM 375
+G A + R + I F D V+ + + PERL V + M
Sbjct: 112 TGAAGRRRRVFHRIDGFFDAVIDKHLEPERLSAGVQEDM 150
>08_02_1593 + 28105567-28105830,28106075-28106164,28106435-28106524
Length = 147
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 226 TLIPSSNVTVTNCGVSLARNPPGILVDEHLQSGSLQ 119
++I S N T++ CG L +L+D H+Q GSLQ
Sbjct: 73 SIIVSYNPTISLCGGELLL----LLIDMHIQCGSLQ 104
>07_01_0962 - 8075975-8077282
Length = 435
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 138 CSPGAYKPLRHMV*PMAAQCQEPQPRGAKSTKPTA 34
C G RH++ M CQEP P A ++ TA
Sbjct: 260 CDSGQLSSARHVLEMMRFSCQEPVPEAAWTSLITA 294
>06_01_0499 - 3581145-3582425
Length = 426
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 588 WPTTALTNPGLWPYTLHHESIQDCIIPPC 674
W TTA PG+ + + E D PPC
Sbjct: 259 WITTAAPTPGMLRFDVRREVFDDFPSPPC 287
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 27.9 bits (59), Expect = 8.6
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = -2
Query: 527 LKEGDTHTFNCTSGDASKM----RHLSFLISNFLDQVLIRGISPERLGGSVTDRM*SNLE 360
+K DTH CTSG + R+L+ + F+D++ RG++ + L + D + +
Sbjct: 353 IKGKDTHLLFCTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRD 412
Query: 359 ASIVEFVDQLIVCVLVADVEGSSGWAAVRVAAAVKDLTVCLNVNDIDTVIERYGYKL 189
++ L+ L A++ S A + + T + + ++ ++ER GYKL
Sbjct: 413 LRLI-----LMSATLNAELFSSYFGGAPTI--HIPGFTYPVRAHFLEDILERTGYKL 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,017,939
Number of Sequences: 37544
Number of extensions: 496131
Number of successful extensions: 1548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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