Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d15r
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    44   2e-05
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    27   3.1  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.4  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = -1

Query: 789 VENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLETTDEKERTVHFPEQFAWEL 610
           +    PL++L   KR   + + P P+ E++   +A++W+L    +        ++   E+
Sbjct: 169 IAEISPLMKLVSAKRFNKSVEFPMPLKERQRRRIALQWILGEC-KSSSPKRLSDRIVKEI 227

Query: 609 LEASNNTGKVVKRKQDLHRQCEANRAYAHYR 517
           +   + T    K+K  LHR C  NR  A  R
Sbjct: 228 IAIRSKTSNCFKKKDHLHRMCLVNRGNAPVR 258


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 717 PITEKRSLFLAIKWLLETTDEKERTVHFPEQFAWELLEASNNTGKVVKR 571
           PIT K SL   I ++ E  D KE     P QF W +       G +VK+
Sbjct: 26  PIT-KSSLMYPI-FISEIDDAKEAIDSMPNQFRWGVNRLEEFLGPLVKK 72


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
 Frame = -1

Query: 711 TEKRSLFLAIKWLLE-------TTDEKERTVHFPEQFAWELLEASNNTGKVVKR-KQDLH 556
           T K    L + WLLE       + DEKER   FPE    +  +       ++ + K +++
Sbjct: 463 TMKIQKSLLVNWLLELMLAKLNSLDEKERLELFPENVMQQRQQVQREFSTLLNQYKDEIN 522

Query: 555 RQCEANRA 532
           R+   N A
Sbjct: 523 REAAYNLA 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,425
Number of Sequences: 5004
Number of extensions: 62099
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)