Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d15r
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal...   107   6e-23
AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal...   105   2e-22
S70004-1|AAB30886.1|  703|Homo sapiens glycogen synthase protein.      31   4.7  
D29685-1|BAA06154.1|  704|Homo sapiens liver glycogen synthase p...    31   4.7  
BC126312-1|AAI26313.1|  703|Homo sapiens glycogen synthase 2 (li...    31   4.7  
BC126310-1|AAI26311.1|  703|Homo sapiens glycogen synthase 2 (li...    31   4.7  
AJ003087-1|CAA05859.1|  703|Homo sapiens liver glycogen synthase...    31   4.7  

>BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 protein.
          Length = 242

 Score =  107 bits (256), Expect = 6e-23
 Identities = 47/93 (50%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
 Frame = -1

Query: 789 VENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLL-ETTDEKERTVHFPEQFAWE 613
           ++NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ E  D+K +    PE+ + +
Sbjct: 149 LKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHK 208

Query: 612 LLEASNNTGKVVKRKQDLHRQCEANRAYAHYRW 514
           LLEA +N G V+KRK DLH+  EANRA AHYRW
Sbjct: 209 LLEAFHNQGPVIKRKHDLHKMAEANRALAHYRW 241


>AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 variant protein.
          Length = 242

 Score =  105 bits (251), Expect = 2e-22
 Identities = 46/93 (49%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = -1

Query: 789 VENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLL-ETTDEKERTVHFPEQFAWE 613
           ++NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ E  D+K +    PE+ + +
Sbjct: 149 LKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHK 208

Query: 612 LLEASNNTGKVVKRKQDLHRQCEANRAYAHYRW 514
           LLEA +N G V+KR  DLH+  EANRA AHYRW
Sbjct: 209 LLEAFHNQGPVIKRSHDLHKMAEANRALAHYRW 241


>S70004-1|AAB30886.1|  703|Homo sapiens glycogen synthase protein.
          Length = 703

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 388 FNLFATLTSKFLCLV*IDYYCHMDDF 465
           F   ATL  ++LC   ID+Y H+D F
Sbjct: 202 FTTHATLLGRYLCAANIDFYNHLDKF 227


>D29685-1|BAA06154.1|  704|Homo sapiens liver glycogen synthase
           protein.
          Length = 704

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 388 FNLFATLTSKFLCLV*IDYYCHMDDF 465
           F   ATL  ++LC   ID+Y H+D F
Sbjct: 202 FTTHATLLGRYLCAANIDFYNHLDKF 227


>BC126312-1|AAI26313.1|  703|Homo sapiens glycogen synthase 2
           (liver) protein.
          Length = 703

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 388 FNLFATLTSKFLCLV*IDYYCHMDDF 465
           F   ATL  ++LC   ID+Y H+D F
Sbjct: 202 FTTHATLLGRYLCAANIDFYNHLDKF 227


>BC126310-1|AAI26311.1|  703|Homo sapiens glycogen synthase 2
           (liver) protein.
          Length = 703

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 388 FNLFATLTSKFLCLV*IDYYCHMDDF 465
           F   ATL  ++LC   ID+Y H+D F
Sbjct: 202 FTTHATLLGRYLCAANIDFYNHLDKF 227


>AJ003087-1|CAA05859.1|  703|Homo sapiens liver glycogen synthase
           protein.
          Length = 703

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 388 FNLFATLTSKFLCLV*IDYYCHMDDF 465
           F   ATL  ++LC   ID+Y H+D F
Sbjct: 202 FTTHATLLGRYLCAANIDFYNHLDKF 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,633,477
Number of Sequences: 237096
Number of extensions: 2271419
Number of successful extensions: 11198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11193
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)