Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d15f
(760 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000241-1|AAH00241.1| 242|Homo sapiens mitochondrial ribosomal... 157 3e-38
AK222995-1|BAD96715.1| 242|Homo sapiens mitochondrial ribosomal... 155 1e-37
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p... 33 0.85
Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein. 33 1.5
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 31 4.5
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 31 4.5
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 31 4.5
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 31 4.5
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein. 31 4.5
AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein. 31 4.5
L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C larg... 30 7.9
>BC000241-1|AAH00241.1| 242|Homo sapiens mitochondrial ribosomal
protein S7 protein.
Length = 242
Score = 157 bits (382), Expect = 3e-38
Identities = 80/188 (42%), Positives = 121/188 (64%), Gaps = 1/188 (0%)
Frame = +2
Query: 200 DYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNK 379
+YY+ P+ ++ K + + LK + P +TSSV+ DP+++K N +M GNK
Sbjct: 49 EYYRKPVEELTEEEKYVRE--LKKTQLIKAAP--AGKTSSVFEDPVISKFTNMMMIGGNK 104
Query: 380 RLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIKR 559
LAR L+ + E +KRKQ E+YH AS EE+A IE NP I ++A++NC+P++ L PI +
Sbjct: 105 VLARSLMIQTLEAVKRKQFEKYHAASA-EEQATIERNPYTIFHQALKNCEPMIGLVPILK 163
Query: 560 GGITYQVPGPITEKRSLFLAIKWLL-ETTDEKERTVHFPEQFAWELLEASNNTGKVVKRK 736
GG YQVP P+ ++R FLA+KW++ E D+K + PE+ + +LLEA +N G V+KRK
Sbjct: 164 GGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRK 223
Query: 737 QDLHRQCE 760
DLH+ E
Sbjct: 224 HDLHKMAE 231
>AK222995-1|BAD96715.1| 242|Homo sapiens mitochondrial ribosomal
protein S7 variant protein.
Length = 242
Score = 155 bits (377), Expect = 1e-37
Identities = 79/188 (42%), Positives = 120/188 (63%), Gaps = 1/188 (0%)
Frame = +2
Query: 200 DYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNK 379
+YY+ P+ ++ K + + LK + P +TSSV+ DP+++K N +M GNK
Sbjct: 49 EYYRKPVEELTEEEKYVRE--LKKTQLIKAAP--AGKTSSVFEDPVISKFTNMMMIGGNK 104
Query: 380 RLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIKR 559
LAR L+ + E +KRKQ E+YH AS EE+A IE NP I ++A++NC+P++ L PI +
Sbjct: 105 VLARSLMIQTLEAVKRKQFEKYHAASA-EEQATIERNPYTIFHQALKNCEPMIGLVPILK 163
Query: 560 GGITYQVPGPITEKRSLFLAIKWLL-ETTDEKERTVHFPEQFAWELLEASNNTGKVVKRK 736
GG YQVP P+ ++R FLA+KW++ E D+K + PE+ + +LLEA +N G V+KR
Sbjct: 164 GGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRS 223
Query: 737 QDLHRQCE 760
DLH+ E
Sbjct: 224 HDLHKMAE 231
>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
protein.
Length = 2585
Score = 33.5 bits (73), Expect = 0.85
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Frame = +2
Query: 344 KVINHVMEKGNK----RLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYK 511
K I+ V EK N+ + R+ + A ++I+ K +E + +E+ +I + K+ + +
Sbjct: 1518 KQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKR 1577
Query: 512 AVENCKPLLQLQPIKRGGITYQVPGPITE---KRSLFLAIKWLLETTDEKERTVHFPEQF 682
E LQ++ + T ++ + E K FL + + ET ++ H EQF
Sbjct: 1578 VQE----ALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQF 1633
Query: 683 AWELLEASNNTGKVVKRKQDLHRQCE 760
+ L N + ++ Q LH E
Sbjct: 1634 ETQKLNLENIETENIRLTQILHENLE 1659
>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
Length = 2663
Score = 32.7 bits (71), Expect = 1.5
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAV 517
+++V +V E + R+ + A ++I+ K +E + +E+ +I + K+ + +
Sbjct: 1540 ISEVQENVNELKQFKEHRKAKDSALQSIESKMLELTNRLQESQEEIQIMIKEKEEMKRVQ 1599
Query: 518 ENCKPLLQLQPIKRGGITYQVPGPITE---KRSLFLAIKWLLETTDEKERTVHFPEQFAW 688
E LQ++ + T ++ + E K FL + + ET ++ H EQF
Sbjct: 1600 E----ALQIERDQLKENTKEIVAKMKESQEKEYQFLKMTAVNETQEKMCEIEHLKEQFET 1655
Query: 689 ELLEASNNTGKVVKRKQDLHRQCE 760
+ L N + ++ Q LH E
Sbjct: 1656 QKLNLENIETENIRLTQILHENLE 1679
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 31.1 bits (67), Expect = 4.5
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQI-ERYHLASTPEEKAKIELNPKDILYKA 514
+ K+++ V++ + RQL E + RK++ E Y L P + KI+ ++ Y++
Sbjct: 1462 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 1521
Query: 515 VENCKPLLQLQPIKRGGITYQVPGPITEK-----RSLFLAIKWLLETTDEKERTVHFPEQ 679
+ + + + L + + T+ + G + + +S+F +++ +E D+ E E+
Sbjct: 1522 LNDLEKDVML--LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEE 1579
Query: 680 FAWELLEASNNTGKVVKRKQDLHRQ 754
E E S + + VK K L R+
Sbjct: 1580 EGEE--EGSESESRSVKVKIKLGRK 1602
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 31.1 bits (67), Expect = 4.5
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQI-ERYHLASTPEEKAKIELNPKDILYKA 514
+ K+++ V++ + RQL E + RK++ E Y L P + KI+ ++ Y++
Sbjct: 1462 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 1521
Query: 515 VENCKPLLQLQPIKRGGITYQVPGPITEK-----RSLFLAIKWLLETTDEKERTVHFPEQ 679
+ + + + L + + T+ + G + + +S+F +++ +E D+ E E+
Sbjct: 1522 LNDLEKDVML--LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEE 1579
Query: 680 FAWELLEASNNTGKVVKRKQDLHRQ 754
E E S + + VK K L R+
Sbjct: 1580 EGEE--EGSESESRSVKVKIKLGRK 1602
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 31.1 bits (67), Expect = 4.5
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQI-ERYHLASTPEEKAKIELNPKDILYKA 514
+ K+++ V++ + RQL E + RK++ E Y L P + KI+ ++ Y++
Sbjct: 1462 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 1521
Query: 515 VENCKPLLQLQPIKRGGITYQVPGPITEK-----RSLFLAIKWLLETTDEKERTVHFPEQ 679
+ + + + L + + T+ + G + + +S+F +++ +E D+ E E+
Sbjct: 1522 LNDLEKDVML--LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEE 1579
Query: 680 FAWELLEASNNTGKVVKRKQDLHRQ 754
E E S + + VK K L R+
Sbjct: 1580 EGEE--EGSESESRSVKVKIKLGRK 1602
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 31.1 bits (67), Expect = 4.5
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQI-ERYHLASTPEEKAKIELNPKDILYKA 514
+ K+++ V++ + RQL E + RK++ E Y L P + KI+ ++ Y++
Sbjct: 1462 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 1521
Query: 515 VENCKPLLQLQPIKRGGITYQVPGPITEK-----RSLFLAIKWLLETTDEKERTVHFPEQ 679
+ + + + L + + T+ + G + + +S+F +++ +E D+ E E+
Sbjct: 1522 LNDLEKDVML--LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEE 1579
Query: 680 FAWELLEASNNTGKVVKRKQDLHRQ 754
E E S + + VK K L R+
Sbjct: 1580 EGEE--EGSESESRSVKVKIKLGRK 1602
>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
Length = 1679
Score = 31.1 bits (67), Expect = 4.5
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Frame = +2
Query: 338 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQI-ERYHLASTPEEKAKIELNPKDILYKA 514
+ K+++ V++ + RQL E + RK++ E Y L P + KI+ ++ Y++
Sbjct: 1494 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 1553
Query: 515 VENCKPLLQLQPIKRGGITYQVPGPITEK-----RSLFLAIKWLLETTDEKERTVHFPEQ 679
+ + + + L + + T+ + G + + +S+F +++ +E D+ E E+
Sbjct: 1554 LNDLEKDVML--LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEE 1611
Query: 680 FAWELLEASNNTGKVVKRKQDLHRQ 754
E E S + + VK K L R+
Sbjct: 1612 EGEE--EGSESESRSVKVKIKLGRK 1634
>AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein.
Length = 1919
Score = 31.1 bits (67), Expect = 4.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 233 DQVKLIADSDLKNRATVPVKPPTVSETSSVYFDP 334
++V + DS+ + A PV+PP SE S YF P
Sbjct: 538 EEVAMDTDSETSSPAPSPVQPPFFSECSLGYFSP 571
>L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C large
subunit protein.
Length = 1148
Score = 30.3 bits (65), Expect = 7.9
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 137 SSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDL-KNRATVPVKPPTVSET 313
SS + SKL I K +S+ + RKE+ +KL ++ K + P K +VS
Sbjct: 311 SSPKASSKLAIMKRKKESSYKEIEPVASKRKENAIKLKGETKTPKKTKSSPAKKESVSPE 370
Query: 314 SSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFEN 418
S +++ +G K L + + K EN
Sbjct: 371 DSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAEN 405
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,170,623
Number of Sequences: 237096
Number of extensions: 2046365
Number of successful extensions: 8393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8389
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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