Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d09r
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   1.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   8.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   8.6  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +2

Query: 176 LHYTYLQYIYNPYTLTVKIQSKNPSAFTLSVPHEGTSL*KYAARFTLGLTYITRNTSKPL 355
           L  T   Y+ N  TL   +QS   S FT+SVP   T     ++ FT  +T  T  +S P 
Sbjct: 481 LPITPSSYLSNT-TLHSSVQSSQSSQFTVSVP-SSTQSYSTSSNFTTPITISTSLSSFPT 538

Query: 356 Y*VHSLSKFMS 388
             V S  ++ S
Sbjct: 539 TIVSSSFQYSS 549


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 162 ESRSRAIFIIFCKHC*ELGLPFYMKIHRFFVKSFIRK 52
           E     IF  FCK      +  Y +IHR F +SF +K
Sbjct: 775 EKVEEKIFSGFCKRIGISDIHTYDEIHRTFTQSFTQK 811


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 507 NHRRTFFVQNNNKTHENYPHIKDYNNNEVXXXXXXXXXXXXFYSVYFVSIGTSVPLNLCT 686
           NH  T  + +++  HEN     +  NNE             +Y  YF+ I   +   +C+
Sbjct: 43  NHTDTE-IDDHDNDHENLDSNNNNENNEAFNEKAAEKKLLPWYRRYFIWILIFIVALICS 101

Query: 687 IL 692
           +L
Sbjct: 102 VL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,520
Number of Sequences: 5004
Number of extensions: 77011
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)