Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d09f
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 100 1e-21
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 88 6e-18
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 38 0.007
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 34 0.11
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 33 0.19
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 4.2
02_02_0737 - 13529180-13529543,13530661-13531178 28 7.3
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 7.3
11_06_0174 - 20907202-20907258,20907875-20908024,20908293-209084... 28 9.7
08_02_0238 + 14665813-14668798,14669088-14669125 28 9.7
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 9.7
03_06_0678 - 35480711-35484658 28 9.7
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824 28 9.7
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 100 bits (239), Expect = 1e-21
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 14/235 (5%)
Frame = +3
Query: 120 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 299
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 300 KGHAAPILYAAWAEAGLFPL--DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAV 470
GH + YA AG + ++LK R+ S GHP V+V TG LGQG+A
Sbjct: 144 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIAN 203
Query: 471 AAGMAYVGKYF---------DQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLDNLVVIF 623
A G+A K+ + + YC++GDG EG E+ A H+ L L+ +
Sbjct: 204 AVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWGLGKLIAFY 263
Query: 624 DVNRLGQSEPTSLQHQLEVYDARLKAFGLNSL-VVDGHD-VTELVKAFDEAASVT 782
D N + T + +V AR +A G +++ V +G+D E+ A EA +VT
Sbjct: 264 DDNHISIDGDTEIAFTEDV-SARFEALGWHTIWVKNGNDGYDEIRAAIKEAKAVT 317
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 88.2 bits (209), Expect = 6e-18
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 12/216 (5%)
Frame = +3
Query: 114 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 293
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 294 LSKGHAAPILYAAWAEAGL--FPLDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGL 464
LS GH + YA AG +D+LK R+ S GHP V+V TG LGQG
Sbjct: 113 LSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGF 172
Query: 465 AVAAGMAYVGKY----FDQAPYRV-----YCLVGDGEAAEGSIWESLHFASHYKLDNLVV 617
A A G+A K+ F++ ++ Y ++GDG EG E+ A H+ L L+
Sbjct: 173 ANAVGLALAEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGHWGLGKLIA 232
Query: 618 IFDVNRLGQSEPTSLQHQLEVYDARLKAFGLNSLVV 725
+D N + T + + AR +A G +++ V
Sbjct: 233 FYDDNHISIDGSTGIAFTEDAL-ARYEALGWHTIWV 267
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 38.3 bits (85), Expect = 0.007
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Frame = +3
Query: 438 GTGSLGQGLAVAAGMAYVGKYFDQAPYR--------VYCLVGDGEAAEGSIWESLHFASH 593
G +G+G+ VA G A+ KY + + GDG G +E L+ A
Sbjct: 182 GFAFIGEGIPVATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQL 241
Query: 594 YKLDNLVVI-FDVNRLGQSEPTSLQHQLEVYDARLKAFGLNSLVVDGHDVTELVKAFDEA 770
+KL + V+ ++ +G S + E+Y + AFG+ + VDG DV ++ + EA
Sbjct: 242 WKLPIVFVVENNLWAIGMSHLRATSDP-EIY-KKGPAFGMPGVHVDGMDVLKVREVAKEA 299
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 34.3 bits (75), Expect = 0.11
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Frame = +3
Query: 417 RLNFVDVGTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHY 596
RLN+ V + Q L A G AY K D+ GDG +EG +L+FA+
Sbjct: 267 RLNYFTVSSPIATQ-LPHAVGAAYSLK-MDKKDACAITYFGDGGTSEGDFHAALNFAA-- 322
Query: 597 KLDNLVVIFDVNR-LGQSEPTSLQHQLEVYD-------------ARLKAFGLNSLVVDGH 734
++ V+ F N S PTS Q + ++Y+ R +A+G+ S+ VDG+
Sbjct: 323 VMEAPVIFFCRNNGWAISTPTSEQFRSDLYNNLNSTAIAGDGAVIRGQAYGMRSIRVDGN 382
Query: 735 DVTELVKAFDEA 770
D + A A
Sbjct: 383 DALAVYSAVHTA 394
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 33.5 bits (73), Expect = 0.19
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 11/187 (5%)
Frame = +3
Query: 99 KNVDFEQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLF--FHTMRYKI--SAP 266
KN+ ++L+ +A++LR D I + + GH S + E+ L F+T + KI
Sbjct: 83 KNLSLKELQQLADELRSDVIFHVSKT-GGHLGSSLGVVELTVALHYVFNTPQDKILWDVG 141
Query: 267 RDASADRFILSKGHAAPILYAAWAEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTG 446
+ + + + P + +G E + DS GH + ++
Sbjct: 142 HQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSE----SEYDSFGTGHSSTTISAALGNLL 197
Query: 447 SLGQGLAVA-------AGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLD 605
Q L + AGMA VG+ V ++GDG G +E+++ A + D
Sbjct: 198 FFLQSLCIELPAYVRLAGMA-VGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD 256
Query: 606 NLVVIFD 626
+V++ D
Sbjct: 257 MIVILND 263
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 403 ATPPRDSTSWTSAPAPW 453
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 622 KMTTRLSSL*WLAKCSDSQMLPSAASPSPTRQYT 521
+ T R SS WLA+ +D A++PSP +Y+
Sbjct: 217 RRTLRASSFTWLARFADFATGSGASTPSPPGRYS 250
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 189 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 344
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
>11_06_0174 -
20907202-20907258,20907875-20908024,20908293-20908414,
20908748-20908901,20909040-20909249
Length = 230
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +3
Query: 363 ELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAGMAYVGKY 500
EL N D L HP PRLN V G G+G V A VG +
Sbjct: 38 ELLNFMTYDR-LACHPGPRLNLV-AGPNGSGKGSLVLGRAASVGAF 81
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 108 DFEQLKDIANKLRIDSI-VATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAP 266
D+ + +AN R++ + +ATN + P+S S+A + L+ H +IS P
Sbjct: 445 DWSFMSSLANCTRLEVLSLATNKLQGSLPSSIGSLANTLGALWLHA--NEISGP 496
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 296 KNKSVGGSVSWR-GDLVPHCVEEENRHYLRH 207
KN GGS S D V HC+ E + + RH
Sbjct: 653 KNVKNGGSFSMNLNDSVTHCIAAEKKDFARH 683
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 644 LPQTVNIEDDDQVVQLVVAGKVQRLPDAALGCLSVAHQAIHPVGRLVEVLPDVGH 480
LP+ ++I Q + L + + +LP+ ++ H H RL + PD+GH
Sbjct: 611 LPEDISILYHLQTLNLSICDCLCQLPNGMKYMTALRHLYTHGCWRLKSMPPDLGH 665
>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
Length = 649
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 596 VVAGKVQRLPDAALGCLSVAHQAIHPVGRLVEVLPDVGHAGRHGE 462
+V GK L DA G ++ +H GRL+E + V HGE
Sbjct: 520 IVTGKKAMLNDAQFGHITDWVWHLHQRGRLLEAVDGVLGTAGHGE 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,793
Number of Sequences: 37544
Number of extensions: 432638
Number of successful extensions: 1561
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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