Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d09f
(785 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 2.4
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 3.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 7.4
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 9.8
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
KVW PDI+ N D
Sbjct: 107 KVWKPDIVLFNNAD 120
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.0 bits (47), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 296 KNKSVGGSVSWRGDLVPHCVEE 231
KN SVGG W G L+ V E
Sbjct: 494 KNNSVGGKKEWTG-LIGELVNE 514
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 67 KLWKPDILMYNSAD 80
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 4.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 155 YCCYKRLKVWSPDIMCVNGGD 217
Y K +W PDI N GD
Sbjct: 116 YIYVKSDDIWVPDISVYNSGD 136
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 135 KLWKPDILMYNSAD 148
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 176 KVWSPDIMCVNGGD 217
K+W PDI+ N D
Sbjct: 135 KLWKPDILMYNSAD 148
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 7.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -1
Query: 494 PDVGHAGRHGEPLAQGAGADVH 429
P GH+G G P+ A H
Sbjct: 1751 PGNGHSGTMGPPVGHPTNASAH 1772
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 21.4 bits (43), Expect = 9.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 128 YRQQTKNRQYCCYKRLKV 181
YRQ TKN Y R K+
Sbjct: 49 YRQDTKNNLLNAYVRFKL 66
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,197
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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