Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d08r
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0407 - 18654134-18654172,18654913-18655803 33 0.38
07_03_1436 - 26543846-26546806 32 0.50
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 29 3.5
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 29 3.5
07_01_0755 - 5806614-5806939,5807039-5809415 29 4.7
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 29 4.7
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 6.2
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 28 8.1
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 837 PPISHRSRLACRRRSDPASDQPSYGQPRRGSQL---LRRFNHSPRMGPDC 697
P RSRL CRR D + GQ RR L L R +HSP P C
Sbjct: 23 PSARRRSRLVCRRWRDVVDARTPEGQSRRAKALVFFLNRGSHSPE--PRC 70
>07_03_1436 - 26543846-26546806
Length = 986
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -1
Query: 359 ITNEQCLTHYPNSRVIQKQTLC----AAYYNDTAQSSCQGDSGGPLTIVDEDGQPT 204
I N QC H+PNS + K A Y TA+ GD G DED PT
Sbjct: 659 IMNSQC-PHHPNSNHVAKDCFVYKQFAEQYAKTARKPSDGDQGTSKKKDDEDDAPT 713
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = -1
Query: 359 ITNEQCLTHYPNSRVIQKQTLC----AAYYNDTAQSSCQGDSGGPLTIVDEDGQPT 204
I N QC H+PNS + K A Y A+ GD G DED PT
Sbjct: 443 IMNSQC-PHHPNSNHMAKDCFVYKQFAEQYVKNARKPADGDQGTSKKKDDEDDAPT 497
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = -1
Query: 335 HYPNSRVIQKQTLCAAYYNDTAQSSCQGDSGGPLTIVDEDGQPTMVGVVSFGHRDGC--- 165
H P SR + ++L ++ Y++ SG + +DE G P+ VS R
Sbjct: 291 HMPESRHRRDESLISSTYSNGYGGDESSFSGSEVDYIDEGGSPSDSDAVSPMSRHSWDYI 350
Query: 164 ---NSPHPSAYVRPGHYH 120
NSPH ++ H H
Sbjct: 351 RRHNSPHSASTFSRAHSH 368
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -1
Query: 677 RINFVVRLGLTNLTRPDYLVETTHKFIHPRYIEILGGVQTDDIALVKLNHHIPYSRYIQ 501
++ V R + + T+ + +E HP + +G V +D+AL+ L+HH+P +Q
Sbjct: 646 KLKSVDRAVIHHQTKMIWELECLSHINHPNLVRPIGYVIYEDVALL-LHHHMPNGTLLQ 703
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 741 ADSPDGADHTKADLMRDLSVFCRPTGYDARLAVR 842
A SPD DH DL+ FC G D +R
Sbjct: 115 ASSPDQMDHHTKDLLLPFQCFCSRRGEDLEAEIR 148
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 28.7 bits (61), Expect = 6.2
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 314 IQKQTLCAAYYNDTAQSSCQGDSGGPLTIVDEDGQPTMVGVVSFGHRDGCNSPHPSAYVR 135
IQ+Q L A+Y ++ QSS + TI +E T G VS + G S +P V
Sbjct: 230 IQQQQLAASYMHNPTQSSLE-------TIAEEG---TTTGSVSTWGQGG-TSEYPPNMVF 278
Query: 134 PGHYHDWFYEVTGINFDWSS-EDLKPIVLAEAQDD 33
Y W+++ W S E + V A A D
Sbjct: 279 YAEYPGWYFDTN--TQQWQSLESYQQAVTASAVQD 311
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 717 PRMGPDCGPLPRQSHQLRGAFGLDEPD 637
P GPD LP + H+++ ++EPD
Sbjct: 490 PTKGPDTPDLPHKEHEVQSVPDVEEPD 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,604,826
Number of Sequences: 37544
Number of extensions: 558867
Number of successful extensions: 1725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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