Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d08f
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0407 - 18654134-18654172,18654913-18655803 33 0.32
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 29 3.9
07_01_0755 - 5806614-5806939,5807039-5809415 29 3.9
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 29 3.9
07_03_0570 - 19601264-19601779 29 5.2
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 29 5.2
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 28 6.9
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 9.1
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 28 9.1
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 28 9.1
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 PPISHRSRLACRRRSDPASDQPSYGQPRRGSQL---LRRFNHSPRMGPDC 271
P RSRL CRR D + GQ RR L L R +HSP P C
Sbjct: 23 PSARRRSRLVCRRWRDVVDARTPEGQSRRAKALVFFLNRGSHSPE--PRC 70
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +2
Query: 110 RRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPR- 286
R KH SH+ RLA R A+ + Y P G ++ PR P + R
Sbjct: 555 RLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQQPQQPRSAPRPQFVVRV 614
Query: 287 -QSHQLRGAFGLDEPDPP 337
Q Q + G P PP
Sbjct: 615 PQPQQQQNQQGTRAPRPP 632
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 291 RINFVVRLGLTNLTRPDYLVETTHKFIHPRYIEILGGVQTDDIALVKLNHHIPYSRYIQ 467
++ V R + + T+ + +E HP + +G V +D+AL+ L+HH+P +Q
Sbjct: 646 KLKSVDRAVIHHQTKMIWELECLSHINHPNLVRPIGYVIYEDVALL-LHHHMPNGTLLQ 703
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 227 ADSPDGADHTKADLMRDLSVFCRPTGYDARLAVR 126
A SPD DH DL+ FC G D +R
Sbjct: 115 ASSPDQMDHHTKDLLLPFQCFCSRRGEDLEAEIR 148
>07_03_0570 - 19601264-19601779
Length = 171
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 HRRSPKHGPPISH-RSRLACRRRSDPASDQPSYGQP 211
H SP+ PISH RS LA + S++ S G P
Sbjct: 5 HHSSPRSSRPISHRRSELAVEAKGRVVSNKASGGSP 40
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 89 CRIRSDHRRSPKHGPPISHRSRLACRRRSDPASDQP 196
CR H P+ GPP+ + A S P+S P
Sbjct: 30 CRRGRGHGHRPRRGPPLLRAASTAAPPSSSPSSQSP 65
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 251 PRMGPDCGPLPRQSHQLRGAFGLDEPD 331
P GPD LP + H+++ ++EPD
Sbjct: 490 PTKGPDTPDLPHKEHEVQSVPDVEEPD 516
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 119 PKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGP 277
P+ PP ++ R + PA +Q YGQP G Q P P GP
Sbjct: 448 PQSAPPQNYGPGYGDPRYNAPAPNQQYYGQPPAGPQQGYPPQQDPYARPYGGP 500
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 110 RRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPRQ 289
R KH +SH+ RLA R A+ + Y P G ++ PR P +P Q
Sbjct: 419 RLEAKHKEQVSHKRRLANFRNQQGANQRVRYTNPYLGGSSSQQ--QQPRSAPRPQFMPGQ 476
Query: 290 SHQ 298
+
Sbjct: 477 GRR 479
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 318 LTNLTRPDYLVETTHKFIHPRYIE-ILGGVQTDDIALVKLNHHIPYSR 458
L N D+ +E + +F + +E + + DD + ++L H+PYS+
Sbjct: 775 LENPKDDDFTLELSKRFTYDDVVEKVANQLGLDDPSKLRLTQHLPYSQ 822
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,549,328
Number of Sequences: 37544
Number of extensions: 496142
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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