Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d07r
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   2.7  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   8.3  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 634 HQVPSESVPMPMETKSTLEELLTRVKLFPPRL 539
           HQ+     P P E+ S L+E+L+  K +P +L
Sbjct: 215 HQMSLSKYPSPNESDSFLDEVLSTSKSYPLKL 246


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 440 QTAKRRKSEQAPQTGPLKFPRRRTI*SKRSCS 535
           Q  K+R+       GP++FPRR +  + RS S
Sbjct: 857 QEEKKRRGNTVDSLGPIRFPRRMSGYNFRSAS 888


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 454 KKVGTSTSNWSFKISSPQNDIKQTFLFGIT 543
           + +     N++ +    +NDIK+TF FGI+
Sbjct: 23  ESISEPVQNYAVQAVVCKNDIKKTFYFGIS 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,770
Number of Sequences: 5004
Number of extensions: 54346
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)