Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d07f
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1330 - 32700333-32700770 29 5.3
03_02_0006 + 4877200-4877386,4877820-4877884,4877996-4878041,487... 29 5.3
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 28 7.0
02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454... 28 7.0
12_02_1217 + 27082452-27083593,27085041-27085158 28 9.2
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 28 9.2
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 9.2
>04_04_1330 - 32700333-32700770
Length = 145
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 95 GALRVGTDADGDEIYAGRAPHEGE 166
G+ R G +DG+E+ GR HEGE
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGE 43
>03_02_0006 +
4877200-4877386,4877820-4877884,4877996-4878041,
4878152-4878205,4879330-4879562
Length = 194
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 98 ALRVGTDADGDEIYAGRA-----PHEGEIVPAKVIPNKNVCFISFCGE 226
A + G+++DGDE+ G A P++G P + VCFI G+
Sbjct: 2 AAKRGSESDGDELGGGGAAEGTSPNDGGASPPPLAAAPAVCFIRSAGD 49
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 364 DPTVVESLTIGCDTKVHCTRGKFTVRGKL 278
DP+ V+S GC ++C + T+ G L
Sbjct: 268 DPSTVKSAVSGCSKIIYCATARSTITGDL 296
>02_01_0606 +
4543031-4543177,4543287-4543709,4543836-4543952,
4544064-4544423
Length = 348
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 74 NQGSIPPGALRVGTDADGDEIYAGRAPH-EGEIVPAKVIPNK 196
N G PP ++DG AG+ PH PA V+P++
Sbjct: 249 NHGQPPPPLQSAAQNSDGSGKSAGKPPHAPAAAPPAPVVPHR 290
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 107 VGTDADGDEIYAGRAPHE 160
VG+DADGD++Y G E
Sbjct: 50 VGSDADGDDLYGGELEEE 67
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 129 TKSTLEELLTRVKLFPPRLFRTRTFALYRSAARKF*RTSLRCLFRLSSLG 278
T T+EE + ++++F LFRT T ++ R F + ++ LF L G
Sbjct: 718 TSGTIEEKIYKLQVFKGALFRTAT--EHKEQTRYFSKRDIQELFSLPEQG 765
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 322 KVHCTRGKFTVRGKLPSEESRNKHLKLVL 236
K+ CT KF+ + + S++ R+K L L L
Sbjct: 2248 KIQCTHAKFSAKIQKSSKDDRDKFLNLAL 2276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,977
Number of Sequences: 37544
Number of extensions: 370847
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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