Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d07f
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.44 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.44 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 GHLVECCLDLSKQEPNDMCLPFSDFYTQLLT 9
           G L  C L L K    D CL  SD   Q+L+
Sbjct: 433 GTLQRCLLSLEKTYERDTCLLASDALKQILS 463


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 101 GHLVECCLDLSKQEPNDMCLPFSDFYTQLLT 9
           G L  C L L K    D CL  SD   Q+L+
Sbjct: 471 GTLQRCLLSLEKTYERDTCLLASDALKQILS 501


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 63  LLA*IKAAFHQVPSESVPMP 122
           LLA I AAF  VP  +VP P
Sbjct: 10  LLATICAAFAYVPLPNVPQP 29


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 373 WTDDAWQDSTFAW 411
           W +  WQD  F W
Sbjct: 72  WLEHEWQDHKFQW 84


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 361 PTVVESLTIGCDTKVHCTRGKFTVRGKLPSEES 263
           P  +E++ +G   ++H +        +LP+EES
Sbjct: 430 PRELEAVNLGSACRIHGSPATTAAPPQLPTEES 462


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 434 HRGENNSNHAKVESCQASSVHRE 366
           H G NN +    ES    SV RE
Sbjct: 315 HNGSNNGSPRSPESNSRCSVKRE 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,543
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)