Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d06r
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    29   0.86 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   2.0  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   6.1  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    26   8.0  

>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
 Frame = +1

Query: 244 FSSFLPYNLREMSR--I*IRGFSTKFMIINLAVPFI----DRITPRNGECWIRGPSVKYI 405
           F  F P  L+E+S+  I +    TK ++ +L+   +    D ITP N + W+   +   +
Sbjct: 29  FYQFDPAKLQELSKQSIALYANDTKALLYDLSDRLVAEYGDLITPVNQDEWVHNNAGGAM 88

Query: 406 FAIFVLISVFS--LAFFG 453
             +F+L + FS  L FFG
Sbjct: 89  GTMFILHASFSEYLIFFG 106


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -3

Query: 636 KNITDLASDFVSKFRSTSISTEKFEEDFLAAHNDHRQ--NHGVKPLVLNKKLCKYAEEWA 463
           KN+  LA  ++  F+S   S + F    + +   H Q  NH    L L K L  ++++  
Sbjct: 78  KNLQKLAKSYLETFQSKHHSPQSFSASVITSMEIHEQLANHS---LTLQKTLSAFSDQVI 134

Query: 462 KALAKKGQTEHRDQNEYGE 406
           +   K  + + +   EY +
Sbjct: 135 E-FHKNAERKRKSIKEYAK 152


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 803 YSLKMSYPLGLCSSALATIVLLENRTTIWLLLHQTEYLLEDPSLVLPLRLQVKEVART 630
           Y   + +   +CS+A+   VL   +    L   QTE LL D S  L L +Q+++ A++
Sbjct: 158 YLFLLGHAKSICSAAVRLDVLTSFQYVSTLAHPQTESLLRDSS-QLALNMQLEDTAQS 214


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 304 STKFMIINLA-VPFIDRITPRNGECWIRGPSV 396
           S +F ++++  + +    +P  GE WIRGP+V
Sbjct: 469 SIEFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 864 SKTGKLYVVANYFPPGNYSGLF 799
           S + +LY V  YF  GNY+ LF
Sbjct: 7   SLSNELYFVRQYFYSGNYTKLF 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,213
Number of Sequences: 5004
Number of extensions: 75845
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)