Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d06f
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.2  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   5.0  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.0  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   6.6  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   8.8  

>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 552 YSLKMSYPLGLCSSALATIVLLENRTTIWLLLHQTEYLLEDPSLVLPLRLQVKEVART 725
           Y   + +   +CS+A+   VL   +    L   QTE LL D S  L L +Q+++ A++
Sbjct: 158 YLFLLGHAKSICSAAVRLDVLTSFQYVSTLAHPQTESLLRDSS-QLALNMQLEDTAQS 214


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 299 YGESVYCGWSPDPNTKIKARDCVDKWYSEINEFSFGKEPEVLNCG 433
           +GE V  GW  D   KI  +DC    +    EF  G+ P    CG
Sbjct: 226 HGEPVAWGW--DGAKKIGVKDCGKPDFGVPVEFKEGEIPIFWGCG 268


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 260 AKRDSLAYSLNQRYGESVYCGWSPDPNTKIKA 355
           A RDS+ Y  + R+  S +C    DP  +I +
Sbjct: 359 ASRDSIIYEYSSRHLNSGFCKTYKDPRLRISS 390


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 332 DPNTKIKARDCVDKWYSE-INEFSFGKEPEVLNCGH 436
           DPN     R+ ++    E I +F  GK+  ++N GH
Sbjct: 296 DPNILYGTREIIEARTKEMIQDFGGGKQGYIINLGH 331


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 171 WTSNASFSKSFDLEVNSLLIVLYVTSIPLNYL 76
           WTSNA + K+ D + + + I  YVT   + ++
Sbjct: 52  WTSNAFYMKTID-QFHEMYISAYVTPSNMRFM 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,466
Number of Sequences: 5004
Number of extensions: 58568
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)