Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d04r
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    32   0.51 
Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine re...    28   8.2  
AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    28   8.2  

>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 690 IHIIIYVKRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLENFTAFLIYFPS 529
           + I IY+  G  I  K    +++V L  F  HF+S+L+ +++  F A  I  PS
Sbjct: 27  VGIPIYIFGGYCILCKTPNQMNLVKLVIFNLHFWSTLMDLFMGLFVAPFILLPS 80


>Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical
           protein F14H3.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 191 LSEIQDVIDADCSVRKKRLDQRKHQNYIVILQVFIITGER*FIEML*RRFPIFHTERMFK 370
           L++++D    +C    K L + K   Y VIL  F++T    F   L  RF I  T+R + 
Sbjct: 6   LADLKD--QTECKTCPKILTRCKGSLYKVILHEFLMTAGAYFGVFLVFRFAINETQREYA 63

Query: 371 LRKKTAISERQ-IC 409
                 + E+Q +C
Sbjct: 64  AEVFKKLKEQQNVC 77


>Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical
           protein F09C6.6 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 669 KRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLEN----FTAFLIYFPSGGLIVIKRI 502
           +R LRI KK    +++  L  F+ H     +  YL++      +F+    S G+I +K I
Sbjct: 86  ERKLRIEKKHFVGIALCDLRIFLKHASMLTIYDYLKDRQDFIESFIEILKSDGIIKVKEI 145

Query: 501 VCF 493
           V F
Sbjct: 146 VFF 148


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 330  NAVSQFFTRNECLNCVRKQQSVRDKFALAPAVSLLASYNVNG 455
            NA++Q  T NE +  + +   +R    L    SLLAS NV G
Sbjct: 2606 NAITQAVTNNEHVVLILEDHQLRKNIFLQAINSLLASGNVPG 2647


>AF099000-2|AAK71875.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein128 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 690 IHIIIYVKRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLENFTAFLIYFPSGG 523
           I + +++  G  I  K    +  V +S F+ HF+SSLL I +       + FP  G
Sbjct: 25  IQVPVHLFGGYVILFKTPQKMKSVKMSMFLLHFWSSLLDITICFLIVPYVIFPIPG 80


>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = -2

Query: 732 LILVGLKAQLINNNIHIIIYVKRGLRIYKKLHCNLSVVCLSFFIAHFYSSLLQIYLENFT 553
           L++V    QL++   H + +      I+ K   ++  +     ++HF+S +L  +    +
Sbjct: 29  LVVVCFSIQLVSIPCHFLTFYL----IFTKTPSSMKFIKFPLLLSHFWSMMLDFWFGILS 84

Query: 552 AFLIYFPSGGLIVIKRIVCFSFP 484
              I+FP+  L     +  F FP
Sbjct: 85  TPYIFFPNLVLFGCGVLNFFRFP 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,839
Number of Sequences: 27780
Number of extensions: 374781
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)