Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d04f
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    74   3e-14
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     70   3e-13
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    30   0.44 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.8  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   4.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   4.1  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   5.5  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   5.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   5.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   7.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   9.5  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   9.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.5  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
 Frame = +2

Query: 113 LTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAP 292
           +++E   EL F   F+ + +   + +    NP  + V+FK+KTTAPK YCVRPNSG + P
Sbjct: 1   MSVECSGELFFYPPFTTMSKELISVH----NPNPEPVIFKVKTTAPKHYCVRPNSGKIEP 56

Query: 293 NSKQEIAITPQPVYLDPNENHK--HKFMVQSVIAPEGKT----NIDQVWKEISPE--QLM 448
            S   + +  Q +  +P  + K   KF++QS+   +  T    N  + W E+  +   + 
Sbjct: 57  KSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIF 116

Query: 449 DYKLKCVFETPRGTNLNDSGDNAAQNDVT 535
           D K++CV+ T +      S D   +N  T
Sbjct: 117 DRKIRCVYSTKQPP---QSADKQVENTST 142


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
 Frame = +2

Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK--HK 364
           + L N     + FK+KTTAPK+YCVRPN G +  NS   + +  QP+  +P    K   K
Sbjct: 23  LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDK 82

Query: 365 FMVQSV-IAPEGK-TNIDQVWKEISPEQLMDYKLKCVF-ETPRGTN 493
           F+VQS  + PE +  +I  +W ++S   + + K++CV+ E P   N
Sbjct: 83  FLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVYSEGPSTAN 128


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 644 SINLKTTNTKSENVESDLQKATLEVIHLREEESKL 748
           +I+ + +   +E  E+D  + TLE++H +E E KL
Sbjct: 104 NISFEKSKRDNEGTENDANQYTLELLHAKESELKL 138


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 323 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISP 436
           Q +Y + +EN +  FM+ +++      +ID +W  +SP
Sbjct: 305 QYMYKEDDENLESYFMMVALLIKYNFISIDNIWAHLSP 342


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +2

Query: 38  IFFLNLLNFANEILCL*YNKMPNQVLTIEPQNELKFKVNFSGLFEHG 178
           +F +   +F ++ + L   KMPN+VLT E  N+++ + +FS    +G
Sbjct: 837 VFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRAERSFSSRRNNG 883


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 329 VYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPE-QLMDY 454
           V+   NE    +  +  +   EG TN+++VW +I+ + Q  D+
Sbjct: 83  VFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDF 125


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 350  NHKHKFM-VQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGT 490
            NH   F  V+  I P G TN+D +W+     +L+D  L  +F T   T
Sbjct: 1160 NHPFIFEDVERAIDPSG-TNVDLLWRAAGKFELLDRILPKLFLTGHKT 1206


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +3

Query: 213 TIQCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNLYIWTPMKTTSIN 365
           +++ Y+ S +    ++  +P++ F+R +RN +  LL   + +   +++  N
Sbjct: 757 SLRLYNVSAEYLSESLEILPVVSFIRNLRNDEKYLLNADFSYALKRSSGSN 807


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 335 LDPNENHKHKFMVQSVIAPEGKTNIDQV 418
           L  N+NH  +  V +V+  +G TN+D +
Sbjct: 168 LSQNKNHFAQLAVDAVLRLKGSTNLDNI 195


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 335 NIQVAE*LRFL-VSNLAQELQNWDARNISLVLLF*S*I-ALYRLSGSLVSCRLCNHAQRA 162
           N+Q  E  ++L VSNL  +++ WD R   +V +F S +   Y +S    S +       A
Sbjct: 228 NLQFTENRKYLLVSNLNSQIRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSSKNIPKNTEA 287

Query: 161 LRN 153
           L N
Sbjct: 288 LPN 290


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 316 NCDFLFRIWRKNSRIGTHAIFLWCC 242
           N + +FR+WR   RI  HAI    C
Sbjct: 233 NEEVIFRLWRNIDRIRLHAIRAQLC 257


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 620 KDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
           KD+D      ++     + + + S+L+K  L +  LRE  + L  E  +IK+
Sbjct: 592 KDNDLRRFHESINKLQDREKELTSNLEKKNLVISSLRETVAMLEKERESIKK 643


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 228 NSTVSFVGFVSLM*VVQPCSKSPEKLTLNFNSFCGSIVSTWLGILLYYKHS 76
           + TVSF G  S   +  P      K T NF +    +VS  L +   Y++S
Sbjct: 164 SKTVSFYGPTSAYDLSLPDITKDNKTTWNFQASYSPMVSECLKLFFRYQYS 214


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 HETNEPDKRYSAIQDQNNSTKE 255
           HE +E  KR   ++++NN  KE
Sbjct: 620 HEFDELQKRLQTLEEENNKAKE 641


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 190 HETNEPDKRYSAIQDQNNSTKEILRASQFWSSCAKFETRNRNYSA 324
           HE  E DK Y ++++  +  ++  R  Q      K+E  N   S+
Sbjct: 84  HEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSS 128


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +2

Query: 617 NKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPA 766
           NKD++H  A +       +  N E+++  +  +    +E  ++L    PA
Sbjct: 81  NKDEEHQTADLLASNEGNEKNNEENNVVSSDSKEAITKESGAELESSEPA 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,228
Number of Sequences: 5004
Number of extensions: 68206
Number of successful extensions: 219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)