Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d04f
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485... 82 6e-16
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 81 1e-15
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065... 71 1e-12
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 56 3e-08
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 52 5e-07
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 50 3e-06
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 40 0.003
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230... 36 0.029
11_06_0355 + 22638029-22638281,22638365-22638593,22640039-226401... 36 0.038
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 35 0.066
03_05_0540 + 25375261-25376931 30 2.5
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 2.5
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 29 5.7
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 29 5.7
02_05_0468 + 29287867-29287872,29289114-29289156,29289324-292894... 29 5.7
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 28 10.0
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 28 10.0
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 28 10.0
>02_05_0103 -
25847224-25847331,25847785-25847862,25848487-25848528,
25848641-25848763,25848856-25848971,25849062-25849143,
25849233-25849303,25849632-25849689
Length = 225
Score = 81.8 bits (193), Expect = 6e-16
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPV-YLDPNENHKHKF 367
+ LTN T++ V FK+KTT+PKKYCVRPN+G++AP S + +T Q P+ K KF
Sbjct: 30 LHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQSTSNVLVTMQAQREAPPDMQCKDKF 89
Query: 368 MVQSVIAPEGKTNID---QVWKEISPEQLMDYKLKCVFETPRGTNLNDSGD 511
+VQS I + T D ++ + S + + KLK V+ P T+LN +
Sbjct: 90 LVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKVVYTQPHPTSLNGGSE 140
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 80.6 bits (190), Expect = 1e-15
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Frame = +2
Query: 98 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNS 277
M L I+P +EL F F L + C+ M+LTN T+ V FK+KTT PK+YCVRPN
Sbjct: 1 MSASFLEIQP-SELSFP--FELLKQSSCS--MQLTNKTDHYVAFKVKTTNPKQYCVRPNI 55
Query: 278 GVLAPNSKQEIAITPQPV-YLDPNENHKHKFMVQSVIAPEGKTNID---QVWKEISPEQL 445
GV+ P S ++ +T Q P+ K KF+VQSV A G T D +++ +++ + +
Sbjct: 56 GVVLPGSTCDVTVTMQAQREAPPDMQCKDKFLVQSVAAENGATTQDISAEMFNKVAGKVV 115
Query: 446 MDYKLKCVF 472
++KL+ V+
Sbjct: 116 EEFKLRVVY 124
>04_04_0742 +
27706150-27706198,27706306-27706376,27706490-27706571,
27706695-27706810,27706899-27707075,27707148-27707195,
27707786-27707863,27708724-27708837
Length = 244
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = +2
Query: 98 MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNS 277
M N +L + P +ELK + + C M+LTN TN V FK+KTT P+KY VR
Sbjct: 1 MSNTLLRVHP-SELKIPYEYKR--KRSCC--MQLTNKTNQYVAFKVKTTNPRKYSVRHAC 55
Query: 278 GVLAPNSKQEIAITPQ-PVYLDPNENHKHKFMVQSVIAPEGKTNID---QVWKEISPEQL 445
G+L P S +I +T Q PV + + + K KF+VQSV G T D +++ + +
Sbjct: 56 GILPPRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVI 115
Query: 446 MDYKLKCVF 472
++KL+ V+
Sbjct: 116 EEFKLRVVY 124
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +2
Query: 230 KIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNE-NHKHKFMVQSVIAPEGKTN 406
++KTT P+KY VRP +G++ P I I+ QP P + N K KF++QSV+ +G T
Sbjct: 249 QVKTTNPRKYSVRPTTGIVLPRGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQ 308
Query: 407 ID---QVWKEISPEQLMDYKLKCVF 472
D ++ + + + + ++KL+ V+
Sbjct: 309 KDIHSDMFSKEAGKVVEEFKLRVVY 333
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 52.0 bits (119), Expect = 5e-07
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Frame = +2
Query: 230 KIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQ-PVYLDPNENHKHKFMVQSVIAPEGKTN 406
K+KTT+P+KY VRPN+ ++ P I IT Q P+ K KF++QS T+
Sbjct: 59 KVKTTSPRKYFVRPNASIIQPWDSCTITITLQAQKEYPPDMQCKDKFLIQST-KVAASTD 117
Query: 407 IDQV----WKEISPEQLMDYKLKCVFETPRGTNLNDSG 508
+D++ + + + + + KLK V+ P G++ +DSG
Sbjct: 118 MDEIPPNTFNKEVDKVIEEMKLKVVYTVPSGSS-DDSG 154
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = +2
Query: 233 IKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENH-KHKFMVQSVIAPEGKTNI 409
+KTT+P+KY VRPN+ ++ P I IT Q P + K KF++QS T++
Sbjct: 350 VKTTSPRKYFVRPNANIVQPWDSCTITITLQAQKEYPQDMQCKDKFLIQST-RVAASTDM 408
Query: 410 DQV----WKEISPEQLMDYKLKCVFETPRGTNLNDSG 508
D++ + + + + + KLK V+ P G++ +DSG
Sbjct: 409 DEIPPDTFNKEVDKVIEEIKLKVVYTVPSGSS-DDSG 444
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 39.5 bits (88), Expect = 0.003
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Frame = +2
Query: 119 IEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNS 298
++P EL+F F + C ++LTN T+ + F K KKY +PN G +AP S
Sbjct: 305 LDPVRELRFP--FEVKKDISCC--LQLTNQTDYFIAFNTKANQ-KKYSTQPNKGTIAPWS 359
Query: 299 KQEIAITPQPVYLDPNENHKH-KFMVQSV-----IAPEGKTNIDQVWKEISPEQLMDYKL 460
+ +T + P H F+VQS + PE + ++++K+ + + + KL
Sbjct: 360 SCYVTVTMKAQETAPPYLQCHDMFVVQSTRVNEDLEPETEDITEELFKKTMGKVVDEEKL 419
Query: 461 KCVF 472
V+
Sbjct: 420 PIVY 423
>08_01_0282 +
2299688-2299859,2300314-2300384,2300780-2300861,
2300949-2301067,2301338-2301415,2301500-2301619,
2301729-2301788
Length = 233
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK 358
+++ N + V FK +TTAPK +RP G+LAP + I T P N K
Sbjct: 68 VKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPG--ESIIATVFKFVEHPENNEK 121
>11_06_0355 +
22638029-22638281,22638365-22638593,22640039-22640189,
22640307-22640507,22641322-22641735
Length = 415
Score = 35.9 bits (79), Expect = 0.038
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPV-YLDPNENHKHKF 367
++LTN ++D V F T KKY + + GV+AP S+ + +T QP PN F
Sbjct: 307 LQLTNKSDDIVEFYANTNK-KKYQIHRDQGVMAPWSRCYVIVTLQPQGSAPPNMQCDDMF 365
Query: 368 MVQS 379
V+S
Sbjct: 366 FVRS 369
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAP 292
+R+ N + V FK +TTAPK +RP +LAP
Sbjct: 120 IRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP 153
>03_05_0540 + 25375261-25376931
Length = 556
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 221 VLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYL 337
V F+++ ++ VRP++G+LAP + A+T + VYL
Sbjct: 38 VAFRLQPAVRSRFAVRPHTGILAPLA----AVTVEVVYL 72
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 344 NENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQL---MDYKLKCVF 472
NE+HKH+ + SV+ G+ + W SP+ L M++ +C+F
Sbjct: 1017 NESHKHQQHIASVLQRLGREKVK--WLNSSPDALKINMEFFQRCIF 1060
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 193 ETNEPDKRYSAIQDQNNSTKEILRASQFWSSCAKFETRNRNYSATCI 333
+ + D Y AI + + TK +R ++ WSSC K R + ++ +
Sbjct: 104 DMGDKDMDYLAIIEYHKPTKPRVRHTRPWSSCTKSSNRGNFHPSSIL 150
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 357 LWFSLGSKYTGCGVIAISCFEFGARTPELGRTQYFFGAVVL-ILNSTVSFV 208
+W L ++AI G R P+ Q F G VVL ++NST+SF+
Sbjct: 67 MWNPLSWVMEAAAIMAIVLANGGGRPPDW---QDFVGIVVLLVINSTISFI 114
>02_05_0468 +
29287867-29287872,29289114-29289156,29289324-29289450,
29289615-29289703,29289794-29289854,29289944-29290011,
29290099-29290227,29291020-29291126,29291210-29291557,
29291803-29291883,29291905-29291952,29292331-29292496,
29292609-29292652
Length = 438
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 516 ALSPESLRLVPRGVSKTHFSL*SMSCSGL 430
A+ PESL P GV TH +L SC+GL
Sbjct: 374 AVDPESL---PEGVKVTHINLNDNSCAGL 399
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 357 LWFSLGSKYTGCGVIAISCFEFGARTPELGRTQYFFGAV-VLILNSTVSFV 208
+W L ++AI+ G+ +L Q F G + +L++NST+SF+
Sbjct: 220 MWNPLSWVMEAAAIMAIALANGGSMAWKLPGWQDFVGIITLLVMNSTISFI 270
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 269 PNSGVLAPNSKQ-EIAITPQPVYLDPNENHKHKFMV--QSVIAPEGKTNIDQV 418
PN+ ++APN K I + Y P +N +MV +S+++ G +I+ V
Sbjct: 287 PNAVLIAPNRKNATILLQKLLYYFPPQDNDLSSYMVGDKSILSDAGLKSIEDV 339
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 330 TGCGVIAISCFEFGAR-TPELGRTQYFFGAVVLILNSTVSFVGFVSLM*VVQPCSKSPEK 154
T C V+ + FGAR ELG T A+ N+ FV L+ + C
Sbjct: 16 TSCSVLCLGAERFGARECEELGFTGL---ALCSDCNALAEFVKDQELVEDCRKCCTEDSD 72
Query: 153 LTLNFNSFCGSIVSTWLGILLYY 85
+++ +F G+I+ + L++Y
Sbjct: 73 DSISKLTFSGAIIEVCMRKLVFY 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,147,360
Number of Sequences: 37544
Number of extensions: 405108
Number of successful extensions: 1053
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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