Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16d04f
(803 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT009811-1|AAP88813.1| 243|Homo sapiens VAMP (vesicle-associate... 143 8e-34
BC001712-1|AAH01712.1| 243|Homo sapiens VAPB protein protein. 143 8e-34
AY358464-1|AAQ88829.1| 243|Homo sapiens VAPB protein. 143 8e-34
AL035455-3|CAC15021.1| 243|Homo sapiens VAMP (vesicle-associate... 143 8e-34
AF086628-1|AAD13577.1| 243|Homo sapiens VAMP-associated protein... 143 8e-34
BT019618-1|AAV38424.1| 242|Homo sapiens VAMP (vesicle-associate... 142 2e-33
BC002992-1|AAH02992.2| 249|Homo sapiens VAMP (vesicle-associate... 142 2e-33
AF154847-1|AAF72105.1| 242|Homo sapiens 33 kDa Vamp-associated ... 142 2e-33
AF086627-1|AAD13576.1| 242|Homo sapiens VAMP-associated protein... 142 2e-33
AF057358-1|AAC26508.1| 242|Homo sapiens VAMP-associated protein... 142 2e-33
AF044670-1|AAD09742.1| 242|Homo sapiens 33 kDa Vamp-associated ... 142 2e-33
AF160212-1|AAF67013.1| 243|Homo sapiens VAMP-associated 33 kDa ... 138 3e-32
AL035455-2|CAM27023.1| 99|Homo sapiens VAMP (vesicle-associate... 74 7e-13
AF086629-1|AAD13578.1| 99|Homo sapiens VAMP-associated protein... 74 7e-13
BC030641-1|AAH30641.1| 518|Homo sapiens motile sperm domain con... 60 7e-09
AL834345-1|CAD39011.1| 243|Homo sapiens hypothetical protein pr... 60 7e-09
AK093075-1|BAC04043.1| 455|Homo sapiens protein ( Homo sapiens ... 60 7e-09
AB209665-1|BAD92902.1| 84|Homo sapiens VAMP-associated protein... 60 7e-09
AK127252-1|BAC86901.1| 147|Homo sapiens n B and C (VAPB). prot... 39 0.018
BC011653-1|AAH11653.1| 235|Homo sapiens motile sperm domain con... 33 0.91
BC005042-1|AAH05042.1| 235|Homo sapiens motile sperm domain con... 33 0.91
AF053356-8|AAC78798.1| 235|Homo sapiens ORF3splicevariant_b pro... 33 0.91
AF053356-7|AAC78799.1| 221|Homo sapiens ORF3splicevariant_a pro... 33 0.91
BC113524-1|AAI13525.1| 578|Homo sapiens IFT74 protein protein. 31 6.4
BC111057-1|AAI11058.2| 239|Homo sapiens EGLN3 protein protein. 31 6.4
BC105939-1|AAI05940.1| 239|Homo sapiens egl nine homolog 3 (C. ... 31 6.4
BC064924-1|AAH64924.2| 239|Homo sapiens egl nine homolog 3 (C. ... 31 6.4
BC023634-1|AAH23634.2| 383|Homo sapiens IFT74 protein protein. 31 6.4
BC010992-1|AAH10992.3| 239|Homo sapiens egl nine homolog 3 (C. ... 31 6.4
AY040325-1|AAK77221.1| 600|Homo sapiens capillary morphogenesis... 31 6.4
AL356133-4|CAH72643.1| 600|Homo sapiens intraflagellar transpor... 31 6.4
AK128681-1|BAC87568.1| 867|Homo sapiens protein ( Homo sapiens ... 31 6.4
AK026274-1|BAB15423.1| 310|Homo sapiens protein ( Homo sapiens ... 31 6.4
AK025273-1|BAB15101.1| 239|Homo sapiens protein ( Homo sapiens ... 31 6.4
AK024365-1|BAB14899.1| 1148|Homo sapiens protein ( Homo sapiens ... 31 6.4
AK023707-1|BAB14650.1| 435|Homo sapiens protein ( Homo sapiens ... 31 6.4
AJ310545-1|CAC42511.1| 239|Homo sapiens EGLN3 protein protein. 31 6.4
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 31 6.4
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 31 6.4
>BT009811-1|AAP88813.1| 243|Homo sapiens VAMP (vesicle-associated
membrane protein)-associated protein B and C protein.
Length = 243
Score = 143 bits (346), Expect = 8e-34
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP ++++ VWKE PE LMD KL+C
Sbjct: 62 DAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>BC001712-1|AAH01712.1| 243|Homo sapiens VAPB protein protein.
Length = 243
Score = 143 bits (346), Expect = 8e-34
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP ++++ VWKE PE LMD KL+C
Sbjct: 62 DAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>AY358464-1|AAQ88829.1| 243|Homo sapiens VAPB protein.
Length = 243
Score = 143 bits (346), Expect = 8e-34
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP ++++ VWKE PE LMD KL+C
Sbjct: 62 DAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>AL035455-3|CAC15021.1| 243|Homo sapiens VAMP (vesicle-associated
membrane protein)-associated protein B and C protein.
Length = 243
Score = 143 bits (346), Expect = 8e-34
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP ++++ VWKE PE LMD KL+C
Sbjct: 62 DAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>AF086628-1|AAD13577.1| 243|Homo sapiens VAMP-associated protein B
protein.
Length = 243
Score = 143 bits (346), Expect = 8e-34
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP ++++ VWKE PE LMD KL+C
Sbjct: 62 DAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>BT019618-1|AAV38424.1| 242|Homo sapiens VAMP (vesicle-associated
membrane protein)-associated protein A, 33kDa protein.
Length = 242
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 62 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 121
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 122 VFEMPNENDKLND 134
>BC002992-1|AAH02992.2| 249|Homo sapiens VAMP (vesicle-associated
membrane protein)-associated protein A, 33kDa protein.
Length = 249
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 13 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 68
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 69 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 128
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 129 VFEMPNENDKLND 141
>AF154847-1|AAF72105.1| 242|Homo sapiens 33 kDa Vamp-associated
protein protein.
Length = 242
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 62 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 121
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 122 VFEMPNENDKLND 134
>AF086627-1|AAD13576.1| 242|Homo sapiens VAMP-associated protein A
protein.
Length = 242
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 62 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 121
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 122 VFEMPNENDKLND 134
>AF057358-1|AAC26508.1| 242|Homo sapiens VAMP-associated protein of
33 kDa protein.
Length = 242
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 62 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 121
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 122 VFEMPNENDKLND 134
>AF044670-1|AAD09742.1| 242|Homo sapiens 33 kDa Vamp-associated
protein protein.
Length = 242
Score = 142 bits (343), Expect = 2e-33
Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
Q+L ++P +LKFK G F TT ++L NP++ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QILVLDPPTDLKFK----GPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGII 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
P S +++ QP DPNE KHKFMVQ++ AP ++++ VWKE P++LMD KL+C
Sbjct: 62 DPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRC 121
Query: 467 VFETP-RGTNLND 502
VFE P LND
Sbjct: 122 VFEMPNENDKLND 134
>AF160212-1|AAF67013.1| 243|Homo sapiens VAMP-associated 33 kDa
protein protein.
Length = 243
Score = 138 bits (333), Expect = 3e-32
Identities = 66/125 (52%), Positives = 86/125 (68%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSGV+
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVI 61
Query: 287 APNSKQEIAITPQPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKC 466
+ +++ QP DPNE KHKFMVQS+ AP +++D KE PE LMD KL+C
Sbjct: 62 DAGASLNVSVMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMDGTRKEAKPEDLMDSKLRC 121
Query: 467 VFETP 481
VFE P
Sbjct: 122 VFELP 126
>AL035455-2|CAM27023.1| 99|Homo sapiens VAMP (vesicle-associated
membrane protein)-associated protein B and C protein.
Length = 99
Score = 73.7 bits (173), Expect = 7e-13
Identities = 34/60 (56%), Positives = 46/60 (76%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
>AF086629-1|AAD13578.1| 99|Homo sapiens VAMP-associated protein C
protein.
Length = 99
Score = 73.7 bits (173), Expect = 7e-13
Identities = 34/60 (56%), Positives = 46/60 (76%)
Frame = +2
Query: 107 QVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
QVL++EPQ+ELKF+ G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 6 QVLSLEPQHELKFR----GPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 61
>BC030641-1|AAH30641.1| 518|Homo sapiens motile sperm domain
containing 2 protein.
Length = 518
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 110 VLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLA 289
+L I P EL F SG + T + LTN T + V FK++TTAP+KY V+P++
Sbjct: 327 LLHISPAEELYFGSTESGEKK----TLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCD 382
Query: 290 PNSKQEIAITPQPVYLDPNENHKHKFMVQSV--IAPEGKTNIDQVWKEISPEQLMDYKLK 463
P + +I ++P L + + M + + G + Q WKE+ ++M+++L+
Sbjct: 383 PGASVDIVVSPHG-GLTVSAQDRFLIMAAEMEQSSGTGPAELTQFWKEVPRNKVMEHRLR 441
Query: 464 C 466
C
Sbjct: 442 C 442
>AL834345-1|CAD39011.1| 243|Homo sapiens hypothetical protein
protein.
Length = 243
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 110 VLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLA 289
+L I P EL F SG + T + LTN T + V FK++TTAP+KY V+P++
Sbjct: 52 LLHISPAEELYFGSTESGEKK----TLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCD 107
Query: 290 PNSKQEIAITPQPVYLDPNENHKHKFMVQSV--IAPEGKTNIDQVWKEISPEQLMDYKLK 463
P + +I ++P L + + M + + G + Q WKE+ ++M+++L+
Sbjct: 108 PGASVDIVVSPHG-GLTVSAQDRFLIMAAEMEQSSGTGPAELTQFWKEVPRNKVMEHRLR 166
Query: 464 C 466
C
Sbjct: 167 C 167
>AK093075-1|BAC04043.1| 455|Homo sapiens protein ( Homo sapiens
cDNA FLJ35756 fis, clone TESTI2004687. ).
Length = 455
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 110 VLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLA 289
+L I P EL F SG + T + LTN T + V FK++TTAP+KY V+P++
Sbjct: 264 LLHISPAEELYFGSTESGEKK----TLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCD 319
Query: 290 PNSKQEIAITPQPVYLDPNENHKHKFMVQSV--IAPEGKTNIDQVWKEISPEQLMDYKLK 463
P + +I ++P L + + M + + G + Q WKE+ ++M+++L+
Sbjct: 320 PGASVDIVVSPHG-GLTVSAQDRFLIMAAEMEQSSGTGPAELTQFWKEVPRNKVMEHRLR 378
Query: 464 C 466
C
Sbjct: 379 C 379
>AB209665-1|BAD92902.1| 84|Homo sapiens VAMP-associated protein
B/C variant protein.
Length = 84
Score = 60.5 bits (140), Expect = 7e-09
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +2
Query: 149 VNFSGLFEHGCTTYMRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVL 286
+ F G F TT ++L NPT+ V FK+KTTAP++YCVRPNSG++
Sbjct: 1 LKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 46
>AK127252-1|BAC86901.1| 147|Homo sapiens n B and C (VAPB).
protein.
Length = 147
Score = 39.1 bits (87), Expect = 0.018
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 416 VWKEISPEQLMDYKLKCVFETP 481
+WKE PE LMD KL+CVFE P
Sbjct: 9 LWKEAKPEDLMDSKLRCVFELP 30
>BC011653-1|AAH11653.1| 235|Homo sapiens motile sperm domain
containing 3 protein.
Length = 235
Score = 33.5 bits (73), Expect = 0.91
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI---TPQPVYLDPNENHK 358
+ L NPT + F++ TAP KY V G + P S +I I P P + D + +
Sbjct: 55 LTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFR 113
>BC005042-1|AAH05042.1| 235|Homo sapiens motile sperm domain
containing 3 protein.
Length = 235
Score = 33.5 bits (73), Expect = 0.91
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI---TPQPVYLDPNENHK 358
+ L NPT + F++ TAP KY V G + P S +I I P P + D + +
Sbjct: 55 LTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFR 113
>AF053356-8|AAC78798.1| 235|Homo sapiens ORF3splicevariant_b
protein.
Length = 235
Score = 33.5 bits (73), Expect = 0.91
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI---TPQPVYLDPNENHK 358
+ L NPT + F++ TAP KY V G + P S +I I P P + D + +
Sbjct: 55 LTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFR 113
>AF053356-7|AAC78799.1| 221|Homo sapiens ORF3splicevariant_a
protein.
Length = 221
Score = 33.5 bits (73), Expect = 0.91
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 191 MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAI---TPQPVYLDPNENHK 358
+ L NPT + F++ TAP KY V G + P S +I I P P + D + +
Sbjct: 41 LTLYNPTGTALRFRVLCTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPIPSHYDVQDRFR 99
>BC113524-1|AAI13525.1| 578|Homo sapiens IFT74 protein protein.
Length = 578
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 391 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 450
Query: 776 GVTALAS 796
+ + +
Sbjct: 451 KIKQMTT 457
>BC111057-1|AAI11058.2| 239|Homo sapiens EGLN3 protein protein.
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>BC105939-1|AAI05940.1| 239|Homo sapiens egl nine homolog 3 (C.
elegans) protein.
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>BC064924-1|AAH64924.2| 239|Homo sapiens egl nine homolog 3 (C.
elegans) protein.
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>BC023634-1|AAH23634.2| 383|Homo sapiens IFT74 protein protein.
Length = 383
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 293 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 352
Query: 776 GVTALAS 796
+ + +
Sbjct: 353 KIKQMTT 359
>BC010992-1|AAH10992.3| 239|Homo sapiens egl nine homolog 3 (C.
elegans) protein.
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>AY040325-1|AAK77221.1| 600|Homo sapiens capillary morphogenesis
protein-1 protein.
Length = 600
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 413 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 472
Query: 776 GVTALAS 796
+ + +
Sbjct: 473 KIKQMTT 479
>AL356133-4|CAH72643.1| 600|Homo sapiens intraflagellar transport
74 homolog (Chlamydomonas) protein.
Length = 600
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 413 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 472
Query: 776 GVTALAS 796
+ + +
Sbjct: 473 KIKQMTT 479
>AK128681-1|BAC87568.1| 867|Homo sapiens protein ( Homo sapiens
cDNA FLJ46845 fis, clone UTERU3001946, highly similar
to Homo sapiens mucin 16 (MUC16). ).
Length = 867
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 348 SLGSKYTGCGVIAISCFEFGART 280
SLG++YTGC VIA+ + GA T
Sbjct: 785 SLGARYTGCRVIALRSVKNGAET 807
>AK026274-1|BAB15423.1| 310|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22621 fis, clone HSI05658. ).
Length = 310
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 123 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 182
Query: 776 GVTALAS 796
+ + +
Sbjct: 183 KIKQMTT 189
>AK025273-1|BAB15101.1| 239|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21620 fis, clone COL07838. ).
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>AK024365-1|BAB14899.1| 1148|Homo sapiens protein ( Homo sapiens
cDNA FLJ14303 fis, clone PLACE2000132. ).
Length = 1148
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 348 SLGSKYTGCGVIAISCFEFGART 280
SLG++YTGC VIA+ + GA T
Sbjct: 609 SLGARYTGCRVIALRSVKNGAET 631
>AK023707-1|BAB14650.1| 435|Homo sapiens protein ( Homo sapiens
cDNA FLJ13645 fis, clone PLACE1011310, weakly similar to
MYOSIN HEAVY CHAIN, GIZZARD SMOOTH MUSCLE. ).
Length = 435
Score = 30.7 bits (66), Expect = 6.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 596 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHENPAIKR 775
+ E K DD S ++ + + ++N+ SD+Q+ L++ + ESK+ E ++K
Sbjct: 248 ITNQELKMMQDDLNFKSTEVQKSQSTAQNLTSDIQRLQLDLQKMELLESKMTEEQHSLKS 307
Query: 776 GVTALAS 796
+ + +
Sbjct: 308 KIKQMTT 314
>AJ310545-1|CAC42511.1| 239|Homo sapiens EGLN3 protein protein.
Length = 239
Score = 30.7 bits (66), Expect = 6.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 559 FCDCNSFLGDIVLGCIIARIVKISATRSFKD 467
FC ++FLG++V C++ R+ ++ T + +D
Sbjct: 28 FCYLDNFLGEVVGDCVLERVKQLHCTGALRD 58
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 348 SLGSKYTGCGVIAISCFEFGART 280
SLG++YTGC VIA+ + GA T
Sbjct: 21613 SLGARYTGCRVIALRSVKNGAET 21635
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 348 SLGSKYTGCGVIAISCFEFGART 280
SLG++YTGC VIA+ + GA T
Sbjct: 6456 SLGARYTGCRVIALRSVKNGAET 6478
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,525,404
Number of Sequences: 237096
Number of extensions: 2315150
Number of successful extensions: 4481
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4464
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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