Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d04f
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.47 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 98   MPNQVLTIEPQNELKFKVNFSGLFEHGCTTYMRLTNPTNDT 220
            +P+Q+L I+  + LK     +GL   G   Y R+  PT  T
Sbjct: 1243 LPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTIT 1283


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 219 QCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNL 329
           QC+S    +     A VP+LE ++Q + K+S+ L+ +
Sbjct: 837 QCWSGEPSKRPLLGAIVPVLESIQQ-KAKRSKSLQEV 872


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 219 QCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNL 329
           QC+S    +     A VP+LE ++Q + K+S+ L+ +
Sbjct: 875 QCWSGEPSKRPLLGAIVPVLESIQQ-KAKRSKSLQEV 910


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,793
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)