Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d02r
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   1.2  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.6  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   2.1  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    28   2.1  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    27   2.8  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   6.5  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    26   8.6  

>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 391 IGIFVLPTSSIALCY-GFDKSMFKSWISDEVAFTLIGCTSAFTVIISFNSFTTFHVKLWK 215
           I IFVL     A+CY  +  ++FK +  DE  +  + C S   + IS   F    +K  K
Sbjct: 109 ISIFVLNVP--AVCYLTYKDALFKDYGKDEWVYFAVWCASCLMIFISLWYFYETWIKAVK 166


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = -3

Query: 547 DKSTHLNTLHGKFAIAALVFTTVSLINGLGSLWAFELRRYIPINVSKLIHIGIGIFVLPT 368
           +KS  LN L+ KF +     T   +++        +    I I VS +I   I + ++P 
Sbjct: 517 NKSDDLNNLNEKFVLGDDA-TAEEIVDAETEKKQLDRSLRIGIFVSWIIFF-ILVIIVPL 574

Query: 367 SSIALCYGFDKSMFKSWISDEVAFTLI 287
                 Y F K  F+ WI   + +TLI
Sbjct: 575 PMYGSKYIFSKLFFRGWIIVIIIWTLI 601


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 586  SPASEESSAHVFCPLISGLRTNHCAETDSEWLQ 684
            SP    +++ +  P   G  TN+  E ++EWLQ
Sbjct: 1583 SPLKAPTASQLIIPNFDGSITNYSGEEETEWLQ 1615


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 721 IVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAI 572
           +VLC++GY+  +  A  + +    WS    LV  R+ +   +     LA+
Sbjct: 264 LVLCLLGYEFFLVYAGYTTNESEKWSDLAHLVKNRKVYMYYENGSQLLAL 313


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 117 YYHLKRLNLMSESIEQQNHKFISNNSYELH*IEFTSNQF 1
           +Y LKRL+ + E I    H+ +   SY+L    FT   F
Sbjct: 68  FYPLKRLSSIPEKIRANYHEELQTTSYDLVRNPFTHGLF 106


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 533 LEYLTREICYSCPRLYDC 480
           + + T E+C  CP L+DC
Sbjct: 264 VRFWTSELCTQCPNLFDC 281


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -3

Query: 550 IDKSTHLNTLHGKFAIAALVFT--TVSLINGLG-SLWAFELRRYIPINVSKLIHIGIGIF 380
           +++STHL +L  K  I ALVF+     L    G S+  F+L     ++   +  +G+G  
Sbjct: 221 LNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKK 280

Query: 379 VLPTSSIALCYGFD-KSMFKSW 317
                 I+L +  D +++F  W
Sbjct: 281 SSEPECISLTWSPDGQTLFSGW 302


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 427 IPINVSKLIHIGIGIFVLPTSSI 359
           +PIN+   + IG+G+ VLP  +I
Sbjct: 149 LPINIQDNVWIGMGVIVLPGVTI 171


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 418 NVSKLIHIGIGIFVLPTSSIALCYGFD 338
           N ++L  +G+G  V+P   +AL Y FD
Sbjct: 179 NPTRLSMLGLGDIVMPGLMLALMYRFD 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,667,127
Number of Sequences: 5004
Number of extensions: 76003
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)