Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d02r
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-8|CAA94743.1|  300|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division...    28   8.1  

>Z70750-8|CAA94743.1|  300|Caenorhabditis elegans Hypothetical
           protein C50F4.8 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 740 GCDTIAYCTMRCGVPIING*SHSESVSAQWLVLKPEISGQKTCALDSSDAGLWIGYC 570
           GC+ I  CT+ C VP I     SE+      + +   +  +  ALD++    W   C
Sbjct: 182 GCEYIT-CTLHCDVPTIAHECDSETAQLVIDLTRKSFASMEKMALDTNAVAKWPQVC 237


>Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.6 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
 Frame = -3

Query: 586 SGLAIVGSFIKIIDKSTHLNT-LHGKFAIAALVFTTVSLINGLGSLWAFELRRYIPINVS 410
           +G++IVG F+K  DK + LN  L     +  ++      I   GS+    +  YI IN+ 
Sbjct: 275 NGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTGSIPLLGI--YIIINLL 332

Query: 409 KLIHIGIGIFVLPTSSIALCYGFDKSMFKSWISDEVAFTLIGCTSAFTVIISFNSFTT 236
            +I I I + VL T          K + KS+IS ++  T +G    +T  I     TT
Sbjct: 333 IMI-IAITVVVLITELRQWAVPRLK-LKKSYISRKLE-TFLGSPIEYTCAILLEFLTT 387


>U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK177.3 protein.
          Length = 206

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 425 SNQCIQTNSHWHWHLRVADVIHC 357
           S Q     SH+H H+R ++VIHC
Sbjct: 46  STQKTGLTSHYHGHIRQSNVIHC 68


>Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical
           protein T27E9.3 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 287 RLYQRVHSNNQLQLIYDFSCQIMEMF 210
           RLY  VHS N+L L++++  Q ++ F
Sbjct: 65  RLYDVVHSENKLTLVFEYCDQDLKKF 90


>AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division
           protein kinase 5 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 287 RLYQRVHSNNQLQLIYDFSCQIMEMF 210
           RLY  VHS N+L L++++  Q ++ F
Sbjct: 65  RLYDVVHSENKLTLVFEYCDQDLKKF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,439
Number of Sequences: 27780
Number of extensions: 428131
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)