Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d02r
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 ALFNLSHNECIYDLKHFHNLT*KV 239
           A+ N S+ E I DLK F+N+  K+
Sbjct: 504 AILNFSNEEQIVDLKAFNNVPKKL 527


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 398 HWHWHL 381
           HWHWHL
Sbjct: 209 HWHWHL 214


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 ALFNLSHNECIYDLKHFHNLT*KV 239
           A+ N S+ E I DLK F+N+  K+
Sbjct: 504 AILNFSNEEQIVDLKAFNNVPKKL 527


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 865 TVHDDNYKIKIFHSTFNL 812
           T+H++NY  K++++  N+
Sbjct: 322 TIHNNNYNKKLYYNIINI 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 493 VFTTVSLINGLGSLWAF 443
           + + V L  GLG+LW F
Sbjct: 29  ILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 493 VFTTVSLINGLGSLWAF 443
           + + V L  GLG+LW F
Sbjct: 82  ILSVVGLAIGLGNLWRF 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,519
Number of Sequences: 438
Number of extensions: 5663
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)