Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d02f
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0518 + 18091601-18091750,18093501-18093549,18094734-180949...    38   0.013
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656...    34   0.16 
12_01_0718 + 6339982-6342981                                           29   3.3  
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176...    29   4.4  
11_03_0079 + 9669666-9669728,9670779-9672545                           28   7.7  

>08_02_0518 +
           18091601-18091750,18093501-18093549,18094734-18094933,
           18095030-18095335
          Length = 234

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +1

Query: 193 LHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFI--K 366
           +H VL ++G  +L  EAIL+     G     KLV     H  LQ L   L+++G +   K
Sbjct: 51  VHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKLV-----HLALQFLAMLLSLIGLWTVWK 105

Query: 367 IIDKST--HLNTLHGKFAIAALVFTTVSLINGLGSLW 471
             D+    HL TLH    ++ ++F ++    G  + W
Sbjct: 106 FHDERQIDHLYTLHSWLGLSCIIFFSLQWATGFYTFW 142


>05_03_0510 +
           14864430-14864792,14865234-14865485,14865573-14865671,
           14865789-14866082,14866630-14867010
          Length = 462

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 333 LWIGYCWIFH*NYRQEHALEYLTREICYSCPRLYDCEFNQRPGIPVGI 476
           LW G C++F      EH L   T ++CY C +    E  + P    G+
Sbjct: 357 LWEGECFVFDKRVSVEHGLAQGTHKLCYGCKKPVSDEDMESPEWEYGV 404


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = +1

Query: 415 IAALVFTTVSLINGLGSLWAFELRRYIPINVSKLIHIGIGIFVLPTSSIALCYGFDKSMF 594
           + +L    VS +  LGS+ ++ +     +NV K  H G+   V P+S + L    D +++
Sbjct: 370 LKSLDLLEVSGLQLLGSIPSW-ISNLTSLNVLKFFHCGLSGPV-PSSIVYLTKLTDLALY 427

Query: 595 KSWISDEVAFTLIGCTSAFTVIISFNSF 678
               S E+A  +   T   T+++  N+F
Sbjct: 428 NCHFSGEIATLVSNLTQLETLLLHSNNF 455


>12_02_0967 -
           24916352-24916402,24916662-24916717,24917602-24917685,
           24917751-24918251,24918520-24919207
          Length = 459

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 280 LRTNHCAETDSEWLQPLIIGTPQRIVQYAMVSHPMEFHYEMKISQKYPRQLLSVCELLD* 101
           L++  CA      LQ   +  P R   Y  V   +E  Y+ + + KYP + +   EL + 
Sbjct: 172 LQSTTCANDVPGILQRKFVSNPSRYKSYVYVGEYLEIFYQYRYT-KYPLRQMFYYELYEA 230

Query: 100 KY 95
            Y
Sbjct: 231 NY 232


>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 461 DPCGHLNCEDIFQSMYPN*FTLALASSCCRRHPL 562
           +PC HL    +  S  PN  T A   S C +H L
Sbjct: 303 EPCLHLFASMMLSSCKPNDITFATLFSVCTKHAL 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,983
Number of Sequences: 37544
Number of extensions: 435345
Number of successful extensions: 967
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)