Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16d01f
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    29   4.0  
11_06_0207 + 21214631-21216121                                         29   5.2  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    29   5.2  
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791...    29   5.2  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    28   6.9  
05_01_0545 - 4756266-4757510                                           28   9.2  
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572...    28   9.2  

>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 60  SVQFQFGRTGCCISPLSSGKPSGQ*TVVAVCQLYYDFFV 176
           ++ FQ+G      SPL + K +G+  V    Q   DFF+
Sbjct: 275 AIGFQYGSPDAVCSPLINAKKTGRSLVETYAQYVQDFFI 313


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 620 WEISTFIPPAVAVKADAWTMPAPILTPMFSTPNLSGKQ 733
           W    +I P++A KAD W +P  + TP+     L+ ++
Sbjct: 451 WPSPVWITPSIA-KADGWCVPCGVGTPVMGGRELARRE 487


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -1

Query: 246 SVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQIET 67
           S++ +SD  T I  +E G   +G+ +SH+         T+  A+P K++K ++  S ++T
Sbjct: 601 SLQENSDGLT-ITSKEGGRKKKGKGKSHD--------VTETSAAPAKDMKDSLADSFLDT 651

Query: 66  VR 61
           VR
Sbjct: 652 VR 653


>04_04_0116 +
           22877296-22877482,22877578-22877627,22879057-22879180,
           22879266-22879373,22879462-22880084
          Length = 363

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 318 FRSRTPVDGDYVYIFSGEVSGYDESVEVSSDSFTVIVYREDGAA 187
           FR  TP+      +  G ++GYD +  +  +    +    DGA+
Sbjct: 245 FRHPTPIGARIRQVMGGRIAGYDINYVIDGEGMRKVAAARDGAS 288


>01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,
            8367403-8367550,8367630-8367873,8368105-8368407,
            8368639-8368851,8368927-8369002,8369533-8369561,
            8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 475  SNQPIPHIIALDPSLHGWTHNPEILNPDDANIVEVLHTTAG 597
            S  P+P+ +  +  L GW   PE    + AN+  V+  TAG
Sbjct: 1080 SPDPVPYKLLAEKEL-GWGGPPEFSTDNPANMASVMGGTAG 1119


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 735 YCLPDRFGVENIGVRMGAGIVQASALTATAGGIKVEISQRIVITNQPGCCV 583
           + LPD FG     V + AG      L A+ G +   +++ ++I N    CV
Sbjct: 207 FALPDNFGNSPASVIVLAGNHFGGCLPASLGNMSATLNEILLINNGLDSCV 257


>02_05_0523 -
           29755007-29755856,29756381-29756940,29757058-29757275,
           29757941-29758067
          Length = 584

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 693 RMGAGIVQASALTATAGGIKVEISQRIVITNQP 595
           RMG G+V   A    AG ++VE  +R+   +QP
Sbjct: 422 RMGVGLVVGMAAMVVAGVVEVERLKRVGAPDQP 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,350,229
Number of Sequences: 37544
Number of extensions: 412212
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)