Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c24f
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 164 1e-41
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 75 1e-14
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 70 4e-13
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 30 0.38
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.38
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.50
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 2.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 4.6
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 6.1
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 164 bits (399), Expect = 1e-41
Identities = 86/181 (47%), Positives = 107/181 (59%)
Frame = +3
Query: 165 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGG 344
I LY + + GE G FL +TSPY WG LGIA VA ++GAA GI G SI+GG
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76
Query: 345 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFG 524
VKAPRIKTKNLIS+IFCE VAIY LI AIV S K ++ + + ++ G+ +F
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA---KINDINPAGFYTKSHYYTGFALFW 133
Query: 525 AGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTS 704
G+ VGL NL C FVK+L+VEIFGS +GLFGLIVG+ +
Sbjct: 134 GGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLIGG 193
Query: 705 K 707
K
Sbjct: 194 K 194
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 74.9 bits (176), Expect = 1e-14
Identities = 43/153 (28%), Positives = 73/153 (47%)
Frame = +3
Query: 249 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 428
+G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 429 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 608
+++SG L++ + +G++ GAGL+VGL L
Sbjct: 73 VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTA 121
Query: 609 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 707
FV ++++ IF +GL+GLIV + + ++
Sbjct: 122 QQPRLFVAMILILIFAEVLGLYGLIVALLLNTR 154
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 69.7 bits (163), Expect = 4e-13
Identities = 42/153 (27%), Positives = 71/153 (46%)
Frame = +3
Query: 249 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 428
+G G+ S+ S +GA G G I G P I K+LI V+ + +YGL+ +
Sbjct: 13 FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72
Query: 429 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 608
++++G + P S+ +G++ AGLAVGL +
Sbjct: 73 VLIAGDMS----PDNDYSL-----FSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFM 123
Query: 609 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 707
FV ++++ IF +GL+GLIVG+ + +K
Sbjct: 124 RQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 620 GSVGSIR*SSTRAHDTNSNSTE*IHQANSESSAEHHV-SRHPVL 492
GSV + SS R + T +NS S+AE+HV SRH V+
Sbjct: 830 GSVSDVSFSSIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVI 873
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -3
Query: 701 CHINANNKAKKTNGRSKNLNDEDLDEQGSVGSIR*SSTRAHDTNSNSTE*IHQANSESSA 522
C+ N+++ +TNG S + N+ + + S S + + + +D+ SNS E I +SS
Sbjct: 46 CNGNSHSLKHETNGASSSNNN--VAKSSSHDSFK-AKPKNYDSTSNSNEPISFNEPDSSN 102
Query: 521 EHH 513
HH
Sbjct: 103 SHH 105
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 245
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 174 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 353
L + LN K ++ + S + WG S+AL++VGA GI G VG ++
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGA--GIIRFGTQNVGCLLRI 842
Query: 354 PRIKTKNLI 380
+NLI
Sbjct: 843 EPNYEQNLI 851
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 437 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 264
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 692 NANNKAKKTNGRSKNLNDEDLDEQ 621
N NN + NG S +L+ +D+D+Q
Sbjct: 84 NVNNGSNSVNGASHDLDSKDVDKQ 107
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 84 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 191
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 402 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 509
++I + A +LS L Y+EPF +S KQ + G
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,902
Number of Sequences: 5004
Number of extensions: 61876
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -