Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c23f
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 25 0.97
04_04_1110 + 30973202-30973870 30 1.7
03_05_0090 - 20694243-20694283,20694300-20694377,20695114-20695546 30 2.3
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 3.9
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 28 6.9
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.9
05_03_0478 - 14526180-14526578 28 6.9
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 28 6.9
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 9.1
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 9.1
01_06_0034 + 25769436-25769701,25769749-25769887 28 9.1
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 25.0 bits (52), Expect(2) = 0.97
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 467 ASVSLADNIIVSDIGAAITIGDVKSNLQNQS-----LRTRSWTSRQQLPRE 604
++VSL D+ +V++IG+ TI K Q Q+ ++ S TSR+Q +E
Sbjct: 198 SNVSLYDSTVVNEIGSMKTIRREKGIEQPQTRAAKDIKVVSHTSRKQQIKE 248
Score = 24.6 bits (51), Expect(2) = 0.97
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 578 TSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTCESKNKI 730
T R + R+D G SR + V+RP + I + S+ TC ++ +
Sbjct: 265 TYRNREGRKDTKSKTGSASRSS-ANTVKRPDKKSMIASSSSSSTCRTRKPV 314
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 543 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 370
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>03_05_0090 - 20694243-20694283,20694300-20694377,20695114-20695546
Length = 183
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 592 LLTAGPTSRPKRLILEVRFDIANSYCSSDVTDND 491
L T PTS K++I +VR+++ Y + D ND
Sbjct: 138 LATPVPTSSKKKIIWDVRYNLKARYVTDDSAKND 171
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 87 CGTADTQARARAKMKAFIVDWIL 19
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -2
Query: 282 SSALTSVTRTEKLMMSDAPGGLQEPA*PSRRRGSAALNNSP--ISLNKFEITMSRMR*EL 109
+S+ + T T + + + A GG + P + + S A S +S+N + +SR R +L
Sbjct: 85 ASSAETATETARRVTTPAAGGGRRPKGILKAQASLARTASKARVSINLQDNEISRERSKL 144
Query: 108 GSKSTSRCGTADTQARARAKM 46
GS + TA T A ++
Sbjct: 145 GSTAARSTTTATTTPAATQQL 165
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 89 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 184
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 572 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 676
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 577 PTSRPKRLILEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 398
P ++ KR + ++ ANS S + DNDV G+ + S+S+D + GS+ D
Sbjct: 457 PRNKTKRPLPGKKWRKANSIKESSLDDNDV---GEAAVSVSDDDEDQVTEGSDELTDVTL 513
Query: 397 NADFSFSGT 371
GT
Sbjct: 514 EGGLRIPGT 522
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 455 AEATASVSLADNIIVS-DIGAAITIGDVKSNLQNQSLRTRSWTSRQQLPREDPCLPDG-L 628
++ + ++ A NI+ S + A + GD+ NL+ + + + P P G L
Sbjct: 995 SKGSTNIIQAKNILSSGQMPLASSPGDLAVNLKAATTPSSQASPHHSTTVSAPLQPTGFL 1054
Query: 629 RSRGQPCSGVRRPT 670
RSR SG+R+P+
Sbjct: 1055 RSRSSAPSGIRQPS 1068
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 9.1
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 233 SDIINFSVRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 412
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 413 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDV 535
S GGL + VA A A S+ + D +A TI +
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGI 554
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 508 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 398
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,452,959
Number of Sequences: 37544
Number of extensions: 366173
Number of successful extensions: 1200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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