Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c23f
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    31   0.87 
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   6.2  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   8.1  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   8.1  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 26/112 (23%), Positives = 45/112 (40%)
 Frame = -2

Query: 534  TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 355
            T P V   P+S   +  +       SA    + +    K     +K  +S SA P+   T
Sbjct: 768  TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827

Query: 354  LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRTEKLMMSDAPGGLQEPA*P 199
                  + S +P      K + L+ +  T + ++  +  S  P GL++PA P
Sbjct: 828  SSHPMVR-SPLPKMSVLEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 534 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 355
           ++P+V      LT   SAR +   AS       +P   +++R       S +  P    T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212

Query: 354 LGTARTKLSRVP 319
            GT+    SR+P
Sbjct: 213 PGTSSNHRSRLP 224


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = -2

Query: 546 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLRTRLKMRIS 385
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A P     P A       +  + 
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118

Query: 384 PSAEPTDAETLGTARTKLSRVPT 316
           P    T   ++ +  T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 483 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVP 319
           A + E  +S +   ++   EAK  +   K  + PSA  +D  +  T  T +++ P
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEP 743


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 429 PEAKDLRTRLKMRISPSAEPTDAETLGT 346
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 572 SWTSR-QQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSNDTCESKNKIM 733
           SW  + +QL  E P L +  R + Q  +     TR +  T+   N +C S NK++
Sbjct: 556 SWNDKLKQLSTELPTLRNTARQKNQDLA----KTRDRLETLRQQNSSCSSSNKVI 606


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 56   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 199
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 56   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 199
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,733
Number of Sequences: 27780
Number of extensions: 290755
Number of successful extensions: 902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)