Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c22r
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    29   0.68 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.4  

>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 496 ETKLSDVVDAQGQQQEREHMQHSEHAPEQRPPAQHAPHHERDEDGEHPEGGVRP 657
           ET+ SD   A+ +  E E  QHS +  E  P  +     E +E+ +  +G + P
Sbjct: 142 ETENSDPKSAENEVLEGETTQHSNN-KEAHPNTEENKEQEDNEEDDEDDGWITP 194


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 535 QQEREHMQHSEHAPEQRPPAQHAPHHERDEDGEHPE 642
           + +  H  +S H PE  P  Q  P  + DE+ +  E
Sbjct: 372 ESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEE 407


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 673 VSRLVDLHHAQHRQHVHEGRVELE 744
           + R + LHH +H  H H G + L+
Sbjct: 215 IFRKLGLHHGKHGHHGHSGSLSLK 238


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 694 HHAQHRQ---HVHEGRVELEVEAVGTDVVAGGEQRHHHH 801
           HH +H     H+H+   + + E++    +      HHHH
Sbjct: 540 HHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHHHH 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,940
Number of Sequences: 5004
Number of extensions: 40623
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)