Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c22f
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   2.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.7  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 315 LLTARTKTGATTWQLPYQSGSMLMSELERTLCWDGSPTDAVGAPSECEGAGSQRGFTLHL 494
           LL+A TKT + T    + + + +   LE    +DG+    +  P   EGA   RG    +
Sbjct: 78  LLSAITKTKSATASYEFTTLTAIPGVLE----YDGAEIQMLDLPGIIEGASQGRGGRQAV 133

Query: 495 ASACAAPL-TVTLRAAPARD 551
           ++A  A L  + L A  A D
Sbjct: 134 SAARTADLILMVLDATKAAD 153


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 135 VVLASNITVEQRILNLEEE--YTLVVTPSIEFILQFVPNEDQAE 260
           VV++SN+T    +  LEEE   T   +  I+ I+ F P+E+ A+
Sbjct: 118 VVVSSNLTSNSEVSKLEEERLSTRSHSQEIKPIVDFGPDEETAK 161


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 250 IKQSSRVGCGCAASAG-TPLGRYCSPPELKQERQHGSS 360
           +K+    G   + S G TP+G Y   P+L Q R   SS
Sbjct: 82  LKEDKESGSNSSESNGITPMGTYSEKPKLLQSRTPPSS 119


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = -3

Query: 559 SSQSLAGAARSVTVRGAAQADARCRVKPRCEPAPSHSDGAPTASVGEPSQHSVRSS 392
           + Q++A +++ +    A+ A ++ +V P   PAP      P+ +  +PS+ +V ++
Sbjct: 272 ADQAVA-SSKPIKKAWASVAKSKKKVTPAPAPAPESEPSKPSIAPSQPSKTNVSAA 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,825
Number of Sequences: 5004
Number of extensions: 54436
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)