Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c22f
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    45   7e-05
AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical ...    37   0.017
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    30   1.5  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    30   1.5  
AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    30   2.0  
AL161712-22|CAO82055.1|  158|Caenorhabditis elegans Hypothetical...    29   3.5  
U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (...    28   6.1  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    28   6.1  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
 Frame = +3

Query: 309 PLLLTARTKTGATTWQLPYQSGSMLMSELERTLCWDGSPTDAVGAPSECEGAGSQRGFTL 488
           PLL   R K    + Q+P    +   S++ RTLC    P          EG      FT+
Sbjct: 70  PLLAVFREKLAILSLQVPLIVDNYEYSQVARTLC----PFTEYK-----EG----EAFTV 116

Query: 489 HLASACAAPLTVTLRAAPARDWLLGFQARTTVTATQTGPAVNYYDFIPGQ-NSVRLIVES 665
            + S+   P+    RA   +++ L   ++  VTA+ + P    YD IPG  +SV + ++S
Sbjct: 117 EVTSS--RPVHYNFRAELVQNFYLYNNSQRLVTASASEPVYLRYD-IPGDVDSVAVHLDS 173

Query: 666 EDEVCATISVQRYTCPL 716
              +C T+SVQ+  CP+
Sbjct: 174 NSTICMTVSVQKIGCPV 190


>AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical
           protein C30E1.4 protein.
          Length = 239

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +3

Query: 486 LHLASACAAPLTVTLRAAPARDWLLGFQARTTVTATQTGPAVNYYDFIPGQNSVRLIVES 665
           +HL+ A  +    +L+     ++L+G   +   +A+ + P    Y F    + V + V S
Sbjct: 107 IHLSVASYSQSVFSLKVESVENFLIGSN-KFNSSASPSAPRYYMYTFPDDVDKVNIRVTS 165

Query: 666 EDEVCATISVQRYTCPL 716
           E E+C  I  ++  CPL
Sbjct: 166 ETEICGKIVTRQVKCPL 182


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +3

Query: 486 LHLASACAAPLTVTLRAAPARDWLLGFQARTTVTATQTGPAVNYYDFIPGQNSVRLIVES 665
           + ++ A + P    LR     ++++G +   +   + + P    Y F    + V + V S
Sbjct: 121 VQISIASSLPSLFNLRVKSVNNFIIGNKTFKS-KGSPSEPRYYMYTFPDDVDKVDIRVTS 179

Query: 666 EDEVCATISVQRYTCPL 716
             E+C  I  +R  CPL
Sbjct: 180 PSEICGKIVARRVNCPL 196


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +3

Query: 483 TLHLASACAAPLTVTLRAAPARDWLLGFQARTTVTATQTGPAVNYYDFIPGQNSVRLIVE 662
           +++++ A + P   ++R  P +++ +G   +  V  +   P    Y F      V +   
Sbjct: 118 SVYISIANSDPTVFSIRVKPVKNFHIGSN-QFEVHTSPPEPRYYLYTFPENVEKVNIRAF 176

Query: 663 SEDEVCATISVQRYTCPL 716
           S+  +C  +  +R  CPL
Sbjct: 177 SDSSICGKLIARRVECPL 194


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 113 RPSLVRERSPR----KQHHRRAENIKPRRRVHVGGDAIHRVHSTVCAERRS-SRVPESVV 277
           R S  R RSPR    ++  RR+ +  PRRR   GGD   R  S       S  RV E V+
Sbjct: 94  RSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQRVKEPVI 153


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 113 RPSLVRERSPR----KQHHRRAENIKPRRRVHVGGDAIHRVHSTVCAERRS-SRVPESVV 277
           R S  R RSPR    ++  RR+ +  PRRR   GGD   R  S       S  RV E V+
Sbjct: 94  RSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDRRRRERSPPSMVPNSPQRVKEPVI 153


>AF101309-3|AAN60514.1|  760|Caenorhabditis elegans Hypothetical
           protein H24G06.1c protein.
          Length = 760

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 161 RAENIKPRRRVHVGGDAIHRVHSTVCAERRSSRVPESVVGAQRRRGHLSAAT 316
           R +N+  R  V V G A+H    T+     SS +  S     R  GHL + T
Sbjct: 20  RLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQT 71


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
           protein H24G06.1b protein.
          Length = 1601

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 161 RAENIKPRRRVHVGGDAIHRVHSTVCAERRSSRVPESVVGAQRRRGHLSAAT 316
           R +N+  R  V V G A+H    T+     SS +  S     R  GHL + T
Sbjct: 20  RLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQT 71


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
           protein H24G06.1a protein.
          Length = 1680

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 161 RAENIKPRRRVHVGGDAIHRVHSTVCAERRSSRVPESVVGAQRRRGHLSAAT 316
           R +N+  R  V V G A+H    T+     SS +  S     R  GHL + T
Sbjct: 20  RLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQT 71


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 733 PRWSPANGHVYLCTEMVAHTSSSDSTISR 647
           P WSP++ H   C   V  +SSS S +SR
Sbjct: 193 PGWSPSSPHSVHCHRRVGWSSSSSSPLSR 221


>AL161712-22|CAO82055.1|  158|Caenorhabditis elegans Hypothetical
           protein Y66D12A.16a protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 134 RSPRKQHHRRAENIKPRRRVHVGGDAIHRVHSTVCAERR 250
           R P K+HHRR E  +  R +     A+  VH T+  E R
Sbjct: 86  RRPLKEHHRRNETRRDYRSI----SAVETVHETIKIESR 120


>U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical
           protein F39B3.3 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -3

Query: 487 RVKPRCEPAPSHSD-GAPT-ASVGEPS---QHSVRSSSDISIDPDWYGS 356
           R +PR   +P+++D  AP  AS   P+    HSVR SS I   PD YGS
Sbjct: 37  RGQPRGSCSPTNNDVSAPGYASRSHPTTDPSHSVRRSSRIRRVPDRYGS 85


>AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (grd
           related) protein13 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 274 CGCAASAGTPLGRYCSPPELKQERQHGSSRTSP 372
           CGCAA A  P+  YC P    ++ Q   S T P
Sbjct: 33  CGCAA-ASLPVRSYCPPSPCGRQFQSFPSYTQP 64


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 526 VTVRGAAQADARCRVKPRCEPAPSHSDGAPTASVGEPSQ 410
           V +R   QADA+C    +  P P    G P    GEP Q
Sbjct: 77  VLLRATRQADAQCCTCQQGPPGPDGEPGTP-GKDGEPGQ 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,827
Number of Sequences: 27780
Number of extensions: 351618
Number of successful extensions: 1211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)