Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16c20f
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.7
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.9
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.9
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 2.9
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 5.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 5.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.8
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 9.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 9.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = +1
Query: 181 SKEPANEDLTGL-SGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPSP 357
S P + +G S P PVP+ I P A P + + PKP P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 358 NIQQP 372
++ P
Sbjct: 1108 SVAVP 1112
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 827 PEACFIVFEGNHSNTCSTCS*RQGGQGARTKCAPELECHCFLSYK--SGLRHSAVHNLTL 654
P+ +++E N+SN C+ C R G K EL+ H ++ +R S++H +
Sbjct: 409 PKLSSLLYE-NYSNQCANCGRRYGNDPESRK---ELDKHSDWHFRINKRIRESSLHGINR 464
Query: 653 C 651
C
Sbjct: 465 C 465
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 148 ITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFT---PEAAQVAHS 318
++QHKTP K K LT + SN S G+ N ++F + Q + S
Sbjct: 111 LSQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQRGSLNTAPSNFAYSHSSSLQTSAS 170
Query: 319 PKPPAHIN 342
+PP N
Sbjct: 171 SRPPVLSN 178
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.9
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = +1
Query: 118 PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPE 297
P KA GM +T P S + L PVPS S+A P A T
Sbjct: 1457 PVQPKAPGM-VTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515
Query: 298 AAQVAHSPKPPAHINLRPSPNIQQPRK*NAAHL 396
++ + S AH+ PSP P+ +AA L
Sbjct: 1516 SSTLPPSQSSFAHV---PSPAPPAPQHPSAAAL 1545
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 79 SSTEETSQLKAGHPPAVKAGGMRITQHK 162
S+T TSQLK H VK +T+H+
Sbjct: 24 STTPSTSQLKHSHESNVKMSTSTVTEHR 51
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 229 PVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRPS 354
P P P + G P A QV H+ + P N RPS
Sbjct: 422 PAPFPPFMMPGLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPS 463
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 61 NYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPS 240
NY ++ SS +E +LK GH ++ G + +H + +S P D++ L+ P S
Sbjct: 4 NYTSLKSSVDEEDELKTGHEIDLEKG--PLPEHNS--EGESTLPPYSDISKLANLVPEDS 59
Query: 241 N 243
+
Sbjct: 60 S 60
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 5.1
Identities = 26/104 (25%), Positives = 40/104 (38%)
Frame = +1
Query: 130 KAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQV 309
K G + K SK+ AN TG SG +S ++ F P V
Sbjct: 399 KKSGDNSEKTKNSLKSSSKKSAN---TG-SGQGKTKVEYVSYNSVDKGNSSPFKPLELNV 454
Query: 310 AHSPKPPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNEIENVR 441
K A ++ PS N+Q+ + A +RL + +E +R
Sbjct: 455 VGEKKANAEVDSLPSENVQESED-DKAFEENRRLRNLGSVEYIR 497
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 5.1
Identities = 22/97 (22%), Positives = 38/97 (39%)
Frame = +1
Query: 145 RITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPK 324
+ T PH + PA T ++ S+P+ AP+ F P + A S
Sbjct: 280 KTTAPPPPHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPS--TLQFNPSPSPAAPS-Y 336
Query: 325 PPAHINLRPSPNIQQPRK*NAAHLITKRLIHNNEIEN 435
PP +++ + ++ Q N + + R H E N
Sbjct: 337 PPVDASVKQAADLDQAI--NFVNNVKNRFSHKPEAYN 371
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 76 MSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISI 255
+SS + V + + +Q K P S + PA+ +S PV S
Sbjct: 173 LSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSA 232
Query: 256 AGAPNKGN 279
+ A N G+
Sbjct: 233 SNAANSGS 240
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 517 AIDWLCPWPPCLHEQCRACVAVLPSKTIKHASWFVFLSRSSDPILHRVRLWT 672
A+ W+ W PC+ + R + PSK+++ F ++ SD R+ + T
Sbjct: 375 AMHWIKAWDPCVFGKSR----LQPSKSMRFNPRFTNITSDSDRPDKRIMMLT 422
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 172 SKDSKEPANEDLTGLSGPSPVPSNPISIAGAPNKGNADFTPEAAQVAHSPKPPAHINLRP 351
S S++ A + S P P P+ P+ + AP+ P A +V +P+ PA +
Sbjct: 498 SSASQKAAQPSVITPSVPQP-PAAPV-VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPE 555
Query: 352 SPNIQQ 369
+P++ Q
Sbjct: 556 APSVPQ 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,983
Number of Sequences: 5004
Number of extensions: 75397
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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