Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16c19f
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)                    29   2.6  
SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7)                    28   5.9  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   7.9  

>SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 479

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 287 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPIA 147
           S  R  LTRL   ++ L +T CE  +  R      N ++ G +LPIA
Sbjct: 260 SNIRGVLTRLQVHSLCLQITKCEFVL--REVEYKGNKITQGGVLPIA 304


>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 305 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 192
           +WD   S A   L   P G+  + L AC+L    R TT
Sbjct: 35  SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72


>SB_33462| Best HMM Match : DUF400 (HMM E-Value=6.7)
          Length = 212

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 346 KLNRPRPRQGGQSXXXXXXXXXXXXXXRVYRRAPC 242
           KL R RPR+ GQS               VYR  PC
Sbjct: 31  KLRRRRPRRPGQSATEKEKPAPVLGPSDVYRENPC 65


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 333 PAPDKADSRELGHPYFPGS 277
           P PD AD +E   PYFP S
Sbjct: 353 PLPDSADPKENTKPYFPQS 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,434
Number of Sequences: 59808
Number of extensions: 282164
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)